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The map label for this gene is nlpD [H]

Identifier: 154248332

GI number: 154248332

Start: 4891775

End: 4893118

Strand: Reverse

Name: nlpD [H]

Synonym: Xaut_4412

Alternate gene names: 154248332

Gene position: 4893118-4891775 (Counterclockwise)

Preceding gene: 154248333

Following gene: 154248331

Centisome position: 92.17

GC content: 71.13

Gene sequence:

>1344_bases
ATGGGACCCTTAACTGCCCGCATGTATTTCGTTGCGTGCGAGTTCGATCACATGCGTATTTCCAGCGAGACTCACGGGCG
TAATGTCTTCGCGCGACTGGCGCTGGTCGGGCTTGTGTCCGGTACGGTTGCCGGGTGCAGTTCGGACTCGACCCGGTTCC
TGACGGATGGCTTTGCGCCCCCGCCCCAGCAGCAGGCCAATGCCGGCTATGGCGGTGGCTACCAGGGTGGCGGCTATCAG
GCCCAGCCCGGTGGCGGCGATGTCACCGGCTCCCTCGGCGCCGCGCCGTCGGGCCGGGTGGATTCCATTCCGTTGCCCCC
GCCCGGACAGGGTAGCGCGGGCATCCAGACGTCTTCCTATGCCGCCTCCGGCACGGCCCAGCCGCTCTATGGCGCGTCGG
GATATGGCGCCACGGCGCCCGCTGCGGTGACAGCCTCTGCCCGCCCGGCGGTGCCGGGAACCCATGTGGTGGTGGGTGGC
GAGACGCTGGCCTCCGTCGCCCGCATGTATGGCGTGACCCCGGCGGCGCTCGGCGCGGCCAACAACATCCCGCCGGGCCA
TACGGTGCGCACCGGCCAGACCCTCGTCATTCCGCCCGGCGGCAACGGCGCATCCCAGGCCCACGCTCAAGCTGCTGCCC
AGCCGGCTGCTGCCGCCAAGCCGCCGCAGGTGGCCGCCGCTCCCAACACCCTGACAGTGCCCGGCAAGCCCGCCAGCCAG
CCGGCGACTGTCGCCGCCAAGCCGCTGACGACCGCTCCCGTCCTCTCCCAGAACCTGACGCCGCCTCAGGCATCCCCGGC
TCCGGTCGCGACCGCCTCCGCCAAGCCGGCTCCCGCCGGCAAGCCCGCAGCCGCCCCCACCCAGGCGGTGGCAAAGTCCT
CGGCGCCTGAGCCGAAGGTGGAAACCGCCGCCAAGGTGACCCCCGCCGACGATGCGGACGACGGCCCCCGCGCTTCGGGT
TCAGGTCCCCAGTTCCGTGCCCCGGTGCGCGGGCGCGTCATCGCCTCCTTCGGTCCCAAGCCGGGCGGCGCCCACAATGA
CGGCGTGAACTTCGCCGTACCGGAAGGCACCGGCGTGCGCGCCGCGGAAGACGGCACGGTGGCCTATGCCGGCAACGAGC
TGAAGGGCTACGGCAACCTGGTGCTGGTGAAGCATGCGGATGGCTACGTCACCGCCTATGCCCACAACAGCGAGCTGAAC
GTGAAGCGCGGCGACACCGTGCGGCGCGGCCAGATCATCGCCAAGGCCGGCCAGAGCGGCAACGTGAACTCGCCGCAGCT
GCATTTCGAGATCCGCAAGGGCTCCACCGCCGTGGACCCGAGCCGCTACGTGGCCGGCCTCTGA

Upstream 100 bases:

>100_bases
CGGCGCCTGCGCGTCCGCCGGTGTTGCTTCCGGGCAACGGACCAGGTGAAACGTTGACGGCGGCGCGCCGGTTCAGGCTG
ACTTAAGCCGCCGTTTACGC

Downstream 100 bases:

>100_bases
GCCGACCCGAATTTCTCCAGACGACGGCCGGGCTTGCCCGGCCGTTTTCATGTCCGGGATCCTGTTCCGGCATGGACGGA
CGGGGAGGGGCGTGGTGCCG

Product: peptidase M23B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 446

Protein sequence:

>447_residues
MGPLTARMYFVACEFDHMRISSETHGRNVFARLALVGLVSGTVAGCSSDSTRFLTDGFAPPPQQQANAGYGGGYQGGGYQ
AQPGGGDVTGSLGAAPSGRVDSIPLPPPGQGSAGIQTSSYAASGTAQPLYGASGYGATAPAAVTASARPAVPGTHVVVGG
ETLASVARMYGVTPAALGAANNIPPGHTVRTGQTLVIPPGGNGASQAHAQAAAQPAAAAKPPQVAAAPNTLTVPGKPASQ
PATVAAKPLTTAPVLSQNLTPPQASPAPVATASAKPAPAGKPAAAPTQAVAKSSAPEPKVETAAKVTPADDADDGPRASG
SGPQFRAPVRGRVIASFGPKPGGAHNDGVNFAVPEGTGVRAAEDGTVAYAGNELKGYGNLVLVKHADGYVTAYAHNSELN
VKRGDTVRRGQIIAKAGQSGNVNSPQLHFEIRKGSTAVDPSRYVAGL

Sequences:

>Translated_447_residues
MGPLTARMYFVACEFDHMRISSETHGRNVFARLALVGLVSGTVAGCSSDSTRFLTDGFAPPPQQQANAGYGGGYQGGGYQ
AQPGGGDVTGSLGAAPSGRVDSIPLPPPGQGSAGIQTSSYAASGTAQPLYGASGYGATAPAAVTASARPAVPGTHVVVGG
ETLASVARMYGVTPAALGAANNIPPGHTVRTGQTLVIPPGGNGASQAHAQAAAQPAAAAKPPQVAAAPNTLTVPGKPASQ
PATVAAKPLTTAPVLSQNLTPPQASPAPVATASAKPAPAGKPAAAPTQAVAKSSAPEPKVETAAKVTPADDADDGPRASG
SGPQFRAPVRGRVIASFGPKPGGAHNDGVNFAVPEGTGVRAAEDGTVAYAGNELKGYGNLVLVKHADGYVTAYAHNSELN
VKRGDTVRRGQIIAKAGQSGNVNSPQLHFEIRKGSTAVDPSRYVAGL
>Mature_446_residues
GPLTARMYFVACEFDHMRISSETHGRNVFARLALVGLVSGTVAGCSSDSTRFLTDGFAPPPQQQANAGYGGGYQGGGYQA
QPGGGDVTGSLGAAPSGRVDSIPLPPPGQGSAGIQTSSYAASGTAQPLYGASGYGATAPAAVTASARPAVPGTHVVVGGE
TLASVARMYGVTPAALGAANNIPPGHTVRTGQTLVIPPGGNGASQAHAQAAAQPAAAAKPPQVAAAPNTLTVPGKPASQP
ATVAAKPLTTAPVLSQNLTPPQASPAPVATASAKPAPAGKPAAAPTQAVAKSSAPEPKVETAAKVTPADDADDGPRASGS
GPQFRAPVRGRVIASFGPKPGGAHNDGVNFAVPEGTGVRAAEDGTVAYAGNELKGYGNLVLVKHADGYVTAYAHNSELNV
KRGDTVRRGQIIAKAGQSGNVNSPQLHFEIRKGSTAVDPSRYVAGL

Specific function: May be involved in stationary-phase survival [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell inner membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789099, Length=120, Percent_Identity=45.8333333333333, Blast_Score=115, Evalue=8e-27,
Organism=Escherichia coli, GI87082174, Length=167, Percent_Identity=38.9221556886228, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI87082297, Length=115, Percent_Identity=40, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081989, Length=123, Percent_Identity=35.7723577235772, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF01551 Peptidase_M23 [H]

EC number: NA

Molecular weight: Translated: 44237; Mature: 44105

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGPLTARMYFVACEFDHMRISSETHGRNVFARLALVGLVSGTVAGCSSDSTRFLTDGFAP
CCCCEEEEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCC
PPQQQANAGYGGGYQGGGYQAQPGGGDVTGSLGAAPSGRVDSIPLPPPGQGSAGIQTSSY
CCHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
AASGTAQPLYGASGYGATAPAAVTASARPAVPGTHVVVGGETLASVARMYGVTPAALGAA
CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCHHHHCCC
NNIPPGHTVRTGQTLVIPPGGNGASQAHAQAAAQPAAAAKPPQVAAAPNTLTVPGKPASQ
CCCCCCCEEECCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEECCCCCCCC
PATVAAKPLTTAPVLSQNLTPPQASPAPVATASAKPAPAGKPAAAPTQAVAKSSAPEPKV
CCEEEECCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCH
ETAAKVTPADDADDGPRASGSGPQFRAPVRGRVIASFGPKPGGAHNDGVNFAVPEGTGVR
HHHEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCE
AAEDGTVAYAGNELKGYGNLVLVKHADGYVTAYAHNSELNVKRGDTVRRGQIIAKAGQSG
ECCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCEEEECCCCCEECCEEEEECCCCC
NVNSPQLHFEIRKGSTAVDPSRYVAGL
CCCCCEEEEEEECCCCCCCHHHHHCCC
>Mature Secondary Structure 
GPLTARMYFVACEFDHMRISSETHGRNVFARLALVGLVSGTVAGCSSDSTRFLTDGFAP
CCCEEEEEEEEEECCCEEECCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCCC
PPQQQANAGYGGGYQGGGYQAQPGGGDVTGSLGAAPSGRVDSIPLPPPGQGSAGIQTSSY
CCHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCC
AASGTAQPLYGASGYGATAPAAVTASARPAVPGTHVVVGGETLASVARMYGVTPAALGAA
CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCHHHHHHHHHHCCCHHHHCCC
NNIPPGHTVRTGQTLVIPPGGNGASQAHAQAAAQPAAAAKPPQVAAAPNTLTVPGKPASQ
CCCCCCCEEECCCEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCEEECCCCCCCC
PATVAAKPLTTAPVLSQNLTPPQASPAPVATASAKPAPAGKPAAAPTQAVAKSSAPEPKV
CCEEEECCCCCCHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHCCCCCCCH
ETAAKVTPADDADDGPRASGSGPQFRAPVRGRVIASFGPKPGGAHNDGVNFAVPEGTGVR
HHHEECCCCCCCCCCCCCCCCCCCEECCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCE
AAEDGTVAYAGNELKGYGNLVLVKHADGYVTAYAHNSELNVKRGDTVRRGQIIAKAGQSG
ECCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEECCEEEECCCCCEECCEEEEECCCCC
NVNSPQLHFEIRKGSTAVDPSRYVAGL
CCCCCEEEEEEECCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9973354 [H]