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The map label for this gene is scpB [H]

Identifier: 154248329

GI number: 154248329

Start: 4889034

End: 4889762

Strand: Reverse

Name: scpB [H]

Synonym: Xaut_4409

Alternate gene names: 154248329

Gene position: 4889762-4889034 (Counterclockwise)

Preceding gene: 154248330

Following gene: 154248328

Centisome position: 92.1

GC content: 70.37

Gene sequence:

>729_bases
ATGACCCGGCCCGCACCGCGCATCGACCTGTTCGACGTGCGTCCGGAGGACGAGCGCGCCTATGCTTTCGCGCGCGACCT
GCGCGTGATCGAGGCGCTGCTCTTCACCTCCTCCGGGCCGGTGGACGCGCGCGCGTTGAAGCCGCATCTCTCCAATGAGG
CAGATCTCGCCGCATTGATGGAAGCGCTGACCGCCGATTATGCCCGGCGCGGCGTCAACATCATGAAGGCCGCCGGCGGC
TGGATGCTGCGCACCGCCCCGGACCTTGCCCGCGTGGTGGCCGGCCCGGTGCCGGAGGCGCGCAAGCTGTCGCGCGCCGC
CATCGAGGTGCTGGCCATCGTCGCCTATCACCAGCCGGTGACACGGGCCGAGATTGAGGAGATCCGGGGTGTGTCCACCT
CCAAGGGCACGCTGGATGTGCTGCTGGAGACCGGATGGGTGCGCCTGCGCGGTCGCCGCAAGGCACCGGGTCGCCCTGTC
ACCTATGGCACCACGCCCGCCTTCCTGGTCCAGTTCGGCCTGGACGCGGTGCAGGACCTGCCGGGCCTCGACGAGATGAA
GGGCGCCGGCCTCATCGACGGGCGCCTGCCGGCGGGCTTCGCCATGCCGCTCCCCTCCGACGATCCTTCGCTGCGGGAGG
ACGAGGAGGCTCTGGAGCCCGAGGCCCTCGATTTCACCCTTTCCCCACCCCCGGACGAGGACGGAACGGACACGCCCGAC
GAGGCTTGA

Upstream 100 bases:

>100_bases
TCCGGCAGGATGCCCCCTTCGCGCCCCTGTGGCTGCGGCCGCGCCCGGCGGAGCCCGTGCTGCCGTTTGAGGCGCCCCAT
GAGGCGCCCGGAGAGGAGAC

Downstream 100 bases:

>100_bases
TACCATCGGCCTCGGTCTTCGGCCGATGCCAAGTGGATACGCTCAAGCGCCGCGCGGGCTTGACCAATGCCCGTGAGTCA
AGCTCACGGGCATCGGTATG

Product: putative transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MTRPAPRIDLFDVRPEDERAYAFARDLRVIEALLFTSSGPVDARALKPHLSNEADLAALMEALTADYARRGVNIMKAAGG
WMLRTAPDLARVVAGPVPEARKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVSTSKGTLDVLLETGWVRLRGRRKAPGRPV
TYGTTPAFLVQFGLDAVQDLPGLDEMKGAGLIDGRLPAGFAMPLPSDDPSLREDEEALEPEALDFTLSPPPDEDGTDTPD
EA

Sequences:

>Translated_242_residues
MTRPAPRIDLFDVRPEDERAYAFARDLRVIEALLFTSSGPVDARALKPHLSNEADLAALMEALTADYARRGVNIMKAAGG
WMLRTAPDLARVVAGPVPEARKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVSTSKGTLDVLLETGWVRLRGRRKAPGRPV
TYGTTPAFLVQFGLDAVQDLPGLDEMKGAGLIDGRLPAGFAMPLPSDDPSLREDEEALEPEALDFTLSPPPDEDGTDTPD
EA
>Mature_241_residues
TRPAPRIDLFDVRPEDERAYAFARDLRVIEALLFTSSGPVDARALKPHLSNEADLAALMEALTADYARRGVNIMKAAGGW
MLRTAPDLARVVAGPVPEARKLSRAAIEVLAIVAYHQPVTRAEIEEIRGVSTSKGTLDVLLETGWVRLRGRRKAPGRPVT
YGTTPAFLVQFGLDAVQDLPGLDEMKGAGLIDGRLPAGFAMPLPSDDPSLREDEEALEPEALDFTLSPPPDEDGTDTPDE
A

Specific function: Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing smc and scpA that pull DNA away from mid-cell into both cell halves [H]

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasm. Note=Associated with two foci at the outer edges of the nucleoid region in young cells, and at four foci within both cell halves in older cells (By similarity) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the scpB family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005234
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04079 DUF387 [H]

EC number: NA

Molecular weight: Translated: 26191; Mature: 26060

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRPAPRIDLFDVRPEDERAYAFARDLRVIEALLFTSSGPVDARALKPHLSNEADLAALM
CCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHH
EALTADYARRGVNIMKAAGGWMLRTAPDLARVVAGPVPEARKLSRAAIEVLAIVAYHQPV
HHHHHHHHHHCCCEEECCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
TRAEIEEIRGVSTSKGTLDVLLETGWVRLRGRRKAPGRPVTYGTTPAFLVQFGLDAVQDL
HHHHHHHHCCCCCCCCCEEEEEECCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHC
PGLDEMKGAGLIDGRLPAGFAMPLPSDDPSLREDEEALEPEALDFTLSPPPDEDGTDTPD
CCCHHHCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCC
EA
CC
>Mature Secondary Structure 
TRPAPRIDLFDVRPEDERAYAFARDLRVIEALLFTSSGPVDARALKPHLSNEADLAALM
CCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHHHHHH
EALTADYARRGVNIMKAAGGWMLRTAPDLARVVAGPVPEARKLSRAAIEVLAIVAYHQPV
HHHHHHHHHHCCCEEECCCCEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
TRAEIEEIRGVSTSKGTLDVLLETGWVRLRGRRKAPGRPVTYGTTPAFLVQFGLDAVQDL
HHHHHHHHCCCCCCCCCEEEEEECCEEEEECCCCCCCCCEECCCCHHHHHHHHHHHHHHC
PGLDEMKGAGLIDGRLPAGFAMPLPSDDPSLREDEEALEPEALDFTLSPPPDEDGTDTPD
CCCHHHCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCC
EA
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA