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The map label for this gene is rlpA [H]

Identifier: 154248243

GI number: 154248243

Start: 4795692

End: 4796636

Strand: Direct

Name: rlpA [H]

Synonym: Xaut_4323

Alternate gene names: 154248243

Gene position: 4795692-4796636 (Clockwise)

Preceding gene: 154248242

Following gene: 154248244

Centisome position: 90.33

GC content: 69.63

Gene sequence:

>945_bases
ATGAAGAGGGGACCGTCGTTGCACTTCCTACCGCGAATTCCGGCTGCGTTGCATCAGTCCTGCCCGCCCCGCGCGGGCGC
GGCAACAGCCGGGAGCGGTGCGGGAGCGAAGCTGGCGGCGGCGCTCGCCGGTTGCCTTGCCGTGGCAGGCTGTGGCTCCA
TTGAAACCCTCGGCAGCAAGATCGATCCGCTCTATGGCGTCTCGGCCAGCCCCCGCGTGGTGGCGGAGGGCGATCCGGTG
CCGCGCGGCGGCGGCGGATACAAGGTGGGCAAGCCCTATACCATCGCCGGGCGCACCTATGTGCCGGCTGAAAACCCCAA
CTACACCGCCGAGGGTCTCGCCTCCTGGTATGGCAAGGACTTCCACGGGCGAAAGACCGCCAACGGCGAGATCTTCGACA
TGGGCTCCATCTCGGCGGCTCACAAGACGCTGCCGATGCCGTCCTATGTGCGTGTCACCAATCTGGCCAACAAACGCTCC
ATCATCGTGCGCGTGAACAATCGCGGTCCCTATGTGGGCGACCGGTTGATCGACGTGTCCTATCGCGCCGCCGACATGCT
CGGCTTCGCGAAGTTCGGTGTCGCCCGGGTGCGGGTGGACTACATGGGCCGCGCGCCCATCGACGAGGACGACGACATCA
AGCTGGCCTCCACCCTGCGCACGGACGGCACCCTCGCGGACCTGAAGGGCACGTCGCCGGTCATGGTGGCGTCCGCCCGT
CCCTTCGTGCCGGACGTGCCATCGGTTCGCGCCGTTCCGGCCTCCGCCCCGCCCAGCGCCGAGGCGCCGATCCCGCCCTC
GCGGCCCTATGACCTCGGCACCTCCGGAAGCCCGGCGTCCAACGCCGGCTCGGTGGCCGTGGCCAGCGCATCGGGCTGGT
CCTCCGGTCCGGCCCCCGTCAGCGGGCTGGGCTTTGCCGGCGTGCCCGCCGAAAGCGCGCGCTGA

Upstream 100 bases:

>100_bases
CATGCTTTTGGCGGAGAATGCGGTTGTCCGGCTCAAGGATGGCGCGCGCCTTGAAGACATCCCGGCCGGGTTTCGGCGCA
AGCAGGAGACCCGGGCATCG

Downstream 100 bases:

>100_bases
ACCGCATTTTCCTGCCCTAGTCCGCGCCGGGGCTTTACCCGTCTCCCGACCTTGGATGATGATCGCCGCGCACCGCCGGC
TGCGCAGGCGAGTCTCGGCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MKRGPSLHFLPRIPAALHQSCPPRAGAATAGSGAGAKLAAALAGCLAVAGCGSIETLGSKIDPLYGVSASPRVVAEGDPV
PRGGGGYKVGKPYTIAGRTYVPAENPNYTAEGLASWYGKDFHGRKTANGEIFDMGSISAAHKTLPMPSYVRVTNLANKRS
IIVRVNNRGPYVGDRLIDVSYRAADMLGFAKFGVARVRVDYMGRAPIDEDDDIKLASTLRTDGTLADLKGTSPVMVASAR
PFVPDVPSVRAVPASAPPSAEAPIPPSRPYDLGTSGSPASNAGSVAVASASGWSSGPAPVSGLGFAGVPAESAR

Sequences:

>Translated_314_residues
MKRGPSLHFLPRIPAALHQSCPPRAGAATAGSGAGAKLAAALAGCLAVAGCGSIETLGSKIDPLYGVSASPRVVAEGDPV
PRGGGGYKVGKPYTIAGRTYVPAENPNYTAEGLASWYGKDFHGRKTANGEIFDMGSISAAHKTLPMPSYVRVTNLANKRS
IIVRVNNRGPYVGDRLIDVSYRAADMLGFAKFGVARVRVDYMGRAPIDEDDDIKLASTLRTDGTLADLKGTSPVMVASAR
PFVPDVPSVRAVPASAPPSAEAPIPPSRPYDLGTSGSPASNAGSVAVASASGWSSGPAPVSGLGFAGVPAESAR
>Mature_314_residues
MKRGPSLHFLPRIPAALHQSCPPRAGAATAGSGAGAKLAAALAGCLAVAGCGSIETLGSKIDPLYGVSASPRVVAEGDPV
PRGGGGYKVGKPYTIAGRTYVPAENPNYTAEGLASWYGKDFHGRKTANGEIFDMGSISAAHKTLPMPSYVRVTNLANKRS
IIVRVNNRGPYVGDRLIDVSYRAADMLGFAKFGVARVRVDYMGRAPIDEDDDIKLASTLRTDGTLADLKGTSPVMVASAR
PFVPDVPSVRAVPASAPPSAEAPIPPSRPYDLGTSGSPASNAGSVAVASASGWSSGPAPVSGLGFAGVPAESAR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=109, Percent_Identity=44.954128440367, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR005728
- InterPro:   IPR022438
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 32069; Mature: 32069

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRGPSLHFLPRIPAALHQSCPPRAGAATAGSGAGAKLAAALAGCLAVAGCGSIETLGSK
CCCCCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCC
IDPLYGVSASPRVVAEGDPVPRGGGGYKVGKPYTIAGRTYVPAENPNYTAEGLASWYGKD
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCHHHHHHHHCCC
FHGRKTANGEIFDMGSISAAHKTLPMPSYVRVTNLANKRSIIVRVNNRGPYVGDRLIDVS
CCCCCCCCCCEEECCCCCHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEH
YRAADMLGFAKFGVARVRVDYMGRAPIDEDDDIKLASTLRTDGTLADLKGTSPVMVASAR
HHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEECCC
PFVPDVPSVRAVPASAPPSAEAPIPPSRPYDLGTSGSPASNAGSVAVASASGWSSGPAPV
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
SGLGFAGVPAESAR
CCCCCCCCCCCCCC
>Mature Secondary Structure
MKRGPSLHFLPRIPAALHQSCPPRAGAATAGSGAGAKLAAALAGCLAVAGCGSIETLGSK
CCCCCCCEECCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCC
IDPLYGVSASPRVVAEGDPVPRGGGGYKVGKPYTIAGRTYVPAENPNYTAEGLASWYGKD
CCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCEECCCCCCCCCHHHHHHHHCCC
FHGRKTANGEIFDMGSISAAHKTLPMPSYVRVTNLANKRSIIVRVNNRGPYVGDRLIDVS
CCCCCCCCCCEEECCCCCHHHHCCCCCCEEEEECCCCCCEEEEEECCCCCCCCCEEEEEH
YRAADMLGFAKFGVARVRVDYMGRAPIDEDDDIKLASTLRTDGTLADLKGTSPVMVASAR
HHHHHHHHHHHHCEEEEEEEECCCCCCCCCCCEEEEEECCCCCCEEECCCCCCEEEECCC
PFVPDVPSVRAVPASAPPSAEAPIPPSRPYDLGTSGSPASNAGSVAVASASGWSSGPAPV
CCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
SGLGFAGVPAESAR
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]