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The map label for this gene is secD

Identifier: 154248229

GI number: 154248229

Start: 4776095

End: 4777702

Strand: Direct

Name: secD

Synonym: Xaut_4309

Alternate gene names: 154248229

Gene position: 4776095-4777702 (Clockwise)

Preceding gene: 154248228

Following gene: 154248230

Centisome position: 89.96

GC content: 67.54

Gene sequence:

>1608_bases
ATGCTGCACTTCTCCCGCCTCAAGACCACGGCGATCCTCCTCACCATCGCCGTGGGACTCTTGTTCGCGCTGCCCAACGT
CCTGCCCCAGAGCGCGCTGGCGCACCTGCCCTCGTGGCTGGCCTCCAGCCGCGTGACGCTGGGCCTCGACCTTCAGGGCG
GCTCGCACATCCTGCTCGAGGTGGACGGTTCGGCGCTGCGCAAGGAACGCACCGAGCAGGTGCGCGACGAGATCCGCCGC
GTCCTGCGTGACCAGAAGATCGGCTATTCCAACCTCGCGGTGCGCGACACCTCGGTGAGCCTGCGGCTGCGCGATCCCGC
CGACACCCAGAAGGCGGTCGCCGAACTGCGCAAGCTGGCAGTGCCGGTGACCAACGCGCTGTTCGGCAATTCGTCCGGCG
AGTTGGATCTCCTGGTCTCCTCCAGCTCCGACGGCGCCGTGACGGTGCAGCTGAGCGAGGCCGGGCTCAACGCCCGCATG
CGCTCGGCGGTGGAGCAGTCCATCGAGATCATCCGCCGCCGTATCGACCAGCTCGGCACGGTGGAACCCAACATCCAGCG
CCAGGGCCTCGACCGCATTCTGGTTCAGGTGCCCGGCCTTCAGGACCCGCAGCGGCTGAAGAATCTGCTCGGCCAGACCG
CCAAGCTCTCGTTCCGCATGGTGGACCAGTCCATGTCGCCCCAGCAGGCGCTGGAAGGCCGCCCGCCGCCGGACTCCGAA
GTGCTGCAGGGTCAGGACGGCCAGCCCTATCTGGTCGAGAAGCAGGTGCGCGTGTCCGGTGAGGACCTGGTGGATGCCCA
GCCGGGCTTCGACCACAATTCCCGCGAGCCCATCGTTTCCTTCCGCTTCAATAACAATGGCGCCCGGCGCTTCGCTGCCA
CCACCCAGGACGCGGTGGGCCGGCCCTTCGCCATCGTGCTCGACAACCAGGTGATTTCCGCCCCGGTGATCCGCGAGCCC
ATCCTCGGCGGCTCGGGGCAGATTTCCGGCTCCTTCACCGTGCAGCAGGCCAACGACCTCGCCATCCTGCTGCGCGCCGG
CGCGCTGCCGGCCCCGCTGAAGGTGGTGGAAGAGCGCACGGTTGGCCCGAGCCTCGGCGCCGACTCGATCCATGCCGGCA
AGGTCGCCGCCTATGTGGCGACGGCGCTGGTGGCGGTGTTCATGATCGCGGTCTACGGCCTGTTCGGCCTGTTCGCGCTG
GTGGCGCTTGCGGTTCACATCATGCTGATGTTCTCGCTCCAGTCGATCCTGGGCGCGACGCTGACCATGCCGGGCATCGC
CGGCGTGGTGCTCACCATCGGCATGGCGGTGGATTCCAACGTCGTCATCTTCGAGCGCATGCGCGACGAGGCGCGGGAAG
GCCGGTCGGCCATTTCCGCCATCGACAAGGGGTTCGTGAACGCGCTCGGCACCATCCTCGACGCCAACGTCACTTCGCTC
GCCACCGCCGTCATCCTGTTCCTCATGGGCGGGTCCGGCCCCGTGCGCGGGTTCGCGGTGACCTATATCCTCGGCCTTCT
GACCACCATGTTCACTGCCTATACCCTGACGCGGCTGATGATCGCCTATTGGGTGAAGTGGCGGCGGCCGGCAAAGCTGC
CCATCTGA

Upstream 100 bases:

>100_bases
GCGCACGCAGATCGCCACCGTCCGCGCCAAGGGCGAGCCGGCCAAGGACGAAGCGCCCGCGGCCTGAGCCGCCGATTCCC
TTTTGAGATAAACGCGCGAC

Downstream 100 bases:

>100_bases
AGGTCCGCCGCACATGCCCTTGATCGATTACATTCCGGCGCAGACCAACATCCACTTCATGCGCCTGCGCCACTGGACGT
TCCCGTTCTCGGCGGTGATA

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 535; Mature: 535

Protein sequence:

>535_residues
MLHFSRLKTTAILLTIAVGLLFALPNVLPQSALAHLPSWLASSRVTLGLDLQGGSHILLEVDGSALRKERTEQVRDEIRR
VLRDQKIGYSNLAVRDTSVSLRLRDPADTQKAVAELRKLAVPVTNALFGNSSGELDLLVSSSSDGAVTVQLSEAGLNARM
RSAVEQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRPPPDSE
VLQGQDGQPYLVEKQVRVSGEDLVDAQPGFDHNSREPIVSFRFNNNGARRFAATTQDAVGRPFAIVLDNQVISAPVIREP
ILGGSGQISGSFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGADSIHAGKVAAYVATALVAVFMIAVYGLFGLFAL
VALAVHIMLMFSLQSILGATLTMPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANVTSL
ATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI

Sequences:

>Translated_535_residues
MLHFSRLKTTAILLTIAVGLLFALPNVLPQSALAHLPSWLASSRVTLGLDLQGGSHILLEVDGSALRKERTEQVRDEIRR
VLRDQKIGYSNLAVRDTSVSLRLRDPADTQKAVAELRKLAVPVTNALFGNSSGELDLLVSSSSDGAVTVQLSEAGLNARM
RSAVEQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRPPPDSE
VLQGQDGQPYLVEKQVRVSGEDLVDAQPGFDHNSREPIVSFRFNNNGARRFAATTQDAVGRPFAIVLDNQVISAPVIREP
ILGGSGQISGSFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGADSIHAGKVAAYVATALVAVFMIAVYGLFGLFAL
VALAVHIMLMFSLQSILGATLTMPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANVTSL
ATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI
>Mature_535_residues
MLHFSRLKTTAILLTIAVGLLFALPNVLPQSALAHLPSWLASSRVTLGLDLQGGSHILLEVDGSALRKERTEQVRDEIRR
VLRDQKIGYSNLAVRDTSVSLRLRDPADTQKAVAELRKLAVPVTNALFGNSSGELDLLVSSSSDGAVTVQLSEAGLNARM
RSAVEQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRPPPDSE
VLQGQDGQPYLVEKQVRVSGEDLVDAQPGFDHNSREPIVSFRFNNNGARRFAATTQDAVGRPFAIVLDNQVISAPVIREP
ILGGSGQISGSFTVQQANDLAILLRAGALPAPLKVVEERTVGPSLGADSIHAGKVAAYVATALVAVFMIAVYGLFGLFAL
VALAVHIMLMFSLQSILGATLTMPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANVTSL
ATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=523, Percent_Identity=37.6673040152964, Blast_Score=323, Evalue=2e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 57606; Mature: 57606

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHFSRLKTTAILLTIAVGLLFALPNVLPQSALAHLPSWLASSRVTLGLDLQGGSHILLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
VDGSALRKERTEQVRDEIRRVLRDQKIGYSNLAVRDTSVSLRLRDPADTQKAVAELRKLA
ECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCCCHHHHHHHHHHHH
VPVTNALFGNSSGELDLLVSSSSDGAVTVQLSEAGLNARMRSAVEQSIEIIRRRIDQLGT
HHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
VEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRPPPDSE
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCCCCCCHH
VLQGQDGQPYLVEKQVRVSGEDLVDAQPGFDHNSREPIVSFRFNNNGARRFAATTQDAVG
HHCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCHHHCC
RPFAIVLDNQVISAPVIREPILGGSGQISGSFTVQQANDLAILLRAGALPAPLKVVEERT
CCEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHC
VGPSLGADSIHAGKVAAYVATALVAVFMIAVYGLFGLFALVALAVHIMLMFSLQSILGAT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANVTSL
HCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MLHFSRLKTTAILLTIAVGLLFALPNVLPQSALAHLPSWLASSRVTLGLDLQGGSHILLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
VDGSALRKERTEQVRDEIRRVLRDQKIGYSNLAVRDTSVSLRLRDPADTQKAVAELRKLA
ECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECEEEEEECCCCCHHHHHHHHHHHH
VPVTNALFGNSSGELDLLVSSSSDGAVTVQLSEAGLNARMRSAVEQSIEIIRRRIDQLGT
HHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCC
VEPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRPPPDSE
CCCCHHHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHCCCCCHHHHHCCCCCCCHH
VLQGQDGQPYLVEKQVRVSGEDLVDAQPGFDHNSREPIVSFRFNNNGARRFAATTQDAVG
HHCCCCCCCEEEEHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEECCCHHHCC
RPFAIVLDNQVISAPVIREPILGGSGQISGSFTVQQANDLAILLRAGALPAPLKVVEERT
CCEEEEECCCCCCCCHHHCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHHHC
VGPSLGADSIHAGKVAAYVATALVAVFMIAVYGLFGLFALVALAVHIMLMFSLQSILGAT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTMPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANVTSL
HCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA