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The map label for this gene is yqgF [C]

Identifier: 154247845

GI number: 154247845

Start: 4340969

End: 4341499

Strand: Reverse

Name: yqgF [C]

Synonym: Xaut_3922

Alternate gene names: 154247845

Gene position: 4341499-4340969 (Counterclockwise)

Preceding gene: 154247846

Following gene: 154247844

Centisome position: 81.78

GC content: 72.69

Gene sequence:

>531_bases
ATGACGCACCCCACCTCCCCTGCCCCCATCGGTCCTTTGGCCGATATCGCGCCACTGCTGCCGCCGCGCGGCGCGCTGCT
CGGGCTCGATCTCGGCACCAAGACCATCGGCGTCGCCTCCTGCGATCCCGACCGTCGGGTGGCCACCGTGGTGGAGACGG
TGCAGCGCACCAAGTTCACCGCCGATGCCCAGCGGCTGCTGGCCCTTGCGGCGGAACGGCGGGCGGTGGGATTCGTGCTC
GGCCTGCCGCTGAACATGGACGCCTCCGAAGGCCCCAGAGCGCAGGCGAGCCGCGCCTTTGCCCGCAACCTCGCGCGCCT
CACGGCGCTGCCCATCGCCCTGTGGGACGAGCGCCTGTCCACCGCGGCGGTTGAGCGGGCCCTCATCTCCGCGGATGTCA
GCCGCGCCCGCCGCGCCGCCGTGGTGGACCAGCACGCTGCCGCCTTCATTCTGGAAGGGGCTCTGGGCTTCCTCTCCCGC
CATGTGCTCCGCCCCGCCGGGAACGAATCCGGAACCGGCCCCCGGGACTGA

Upstream 100 bases:

>100_bases
GGCTTGGCGTCATCGCGGACGAACTGGGCCTCGACATTTCCCCCTGAGGTCGCAAGTGGTCCGCATTCACCCCCGCCCGA
AAATGCTTTAGCCATAGGCA

Downstream 100 bases:

>100_bases
TTCGATCACAGCCCGTTGCCCCTGCGTTCCCGCCCGGGAGCGAGCCTGTCCCGTTTCGGGACGGTGGATTTCCCCAATCC
GCCCGCCTAAAGGTGGGGCC

Product: Holliday junction resolvase YqgF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MTHPTSPAPIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLALAAERRAVGFVL
GLPLNMDASEGPRAQASRAFARNLARLTALPIALWDERLSTAAVERALISADVSRARRAAVVDQHAAAFILEGALGFLSR
HVLRPAGNESGTGPRD

Sequences:

>Translated_176_residues
MTHPTSPAPIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLALAAERRAVGFVL
GLPLNMDASEGPRAQASRAFARNLARLTALPIALWDERLSTAAVERALISADVSRARRAAVVDQHAAAFILEGALGFLSR
HVLRPAGNESGTGPRD
>Mature_175_residues
THPTSPAPIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFTADAQRLLALAAERRAVGFVLG
LPLNMDASEGPRAQASRAFARNLARLTALPIALWDERLSTAAVERALISADVSRARRAAVVDQHAAAFILEGALGFLSRH
VLRPAGNESGTGPRD

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=129, Percent_Identity=34.1085271317829, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 18496; Mature: 18365

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHPTSPAPIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFT
CCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
ADAQRLLALAAERRAVGFVLGLPLNMDASEGPRAQASRAFARNLARLTALPIALWDERLS
HHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAAVERALISADVSRARRAAVVDQHAAAFILEGALGFLSRHVLRPAGNESGTGPRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
THPTSPAPIGPLADIAPLLPPRGALLGLDLGTKTIGVASCDPDRRVATVVETVQRTKFT
CCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCHHHHHHHHHHHHHHHH
ADAQRLLALAAERRAVGFVLGLPLNMDASEGPRAQASRAFARNLARLTALPIALWDERLS
HHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TAAVERALISADVSRARRAAVVDQHAAAFILEGALGFLSRHVLRPAGNESGTGPRD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA