| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is slt [H]
Identifier: 154247751
GI number: 154247751
Start: 4247908
End: 4250226
Strand: Reverse
Name: slt [H]
Synonym: Xaut_3828
Alternate gene names: 154247751
Gene position: 4250226-4247908 (Counterclockwise)
Preceding gene: 154247758
Following gene: 154247743
Centisome position: 80.06
GC content: 69.04
Gene sequence:
>2319_bases ATGTCGCCTGTTTCGAGCCTGATTTCCGTGAGCGCGCTTGCGCTCGCCCTCGCGTGGAGCGGGGCGATGCCGGCTCTCGC GGAGACCACGCCGACGGCCAAGCCGGCCTCCGCCAAGGACAGCGCGAAGGACGCCAAGGCCAAGGATTCGAAGGCGAAGG ATACCCATTCCGCCAAGGACACCAAGGCCAAGGACGCCAAGGCCCACGACAGCAAGGCGAAGGACGCCAAGGCCAAGGAC ACCAAACCGACCGGCAATGCCAAGGCATCTGCCGACGCCAAGTCCGGCAAGGACGCCAAGGCCCACAAGGATGCGGCAAA GCCGTCCACCTCCAAGCCCTCGGGCAAGCCGGCCACCGCCCGCGCCCCGGCCGCCACGCCCCAGGTGGCGCCGACGCTGG GCGCCTCGTCCAACATTCCCGGCGGCGACCTCGCCGCGCTGAAGGTGGCGGTGAACGCCGCCAAGAACGGACGCGCGGCG GAAGCCATGGGCGCCGCCCAGCAGCTCGACGATCCGGCGGCGCGCAGCCTCGTGACCTGGCTCGTCATCCGCCACGCGCC CAACGACCTCGGCTTCGACGCCATCAACCAGTTCCTGAAGGACAAGCCCGGCTGGCCGACCCAGAACACCCTGCGCCGCC GCGCCGAGCGGGTGCTGTTCCAGGAGAACCGCGACCCGGCCAAGGCGCGCGACTTCTTCGCCGAGCAGCCGCCGCTCTCC GGCGAGGGCAAGATCGCGCTCGCCCGCTACCTCGTGGCCGCCGGCAACCGCTCGGATGCGGCCGACTGGGTGCGAGAGGC GTGGCGCGAGGATGAGCTGAACGAGAGCTTCGAATCGAAGATCATCGACGAGTTCTCCGGCTTCCTCACCCGCACCGACC ACAAGCTGCGGGCCGACCGCTTCAGCTACAAGCCGGACCCCGACCGCGCCCTGCGCGCCGCCGCCCGCGCCGGCTCGGAC ATCGTCGCCCTCACCAAGGCGCGCATGGCCATCGCAAAGAAGGACTCCAACGGCGAGAAGCTACTGGCCCAGGTGCCGTT CAATTTGTCGAGCGATCCGGCCTATCTGTTCGCCAAGTCCCAACTCGCCCGCCGGGCCGACAAGCCGCAGGACGCCGCGC GCGCGCTCCTGGCCGGCGCCACCTCCGACCAGGTGCGGGCCGATCCAGACGAATGGTGGATCGAGCGGCGCCTCGTCGCC CGCGAGCTGCTGGACGCCGGCGATTTCCAGACCGCCTACAAGGTGGCCGCCACCGGCGTGCCGCCCAAGGCCGACAATTA CCGTGCCGAGCAGCACTTCACCGCCGGCTGGATCGCCCTGCGCTTCCTGAAGGACCCGCGCACCGCCGCCCAGCATTTCG CCAAGATCGACGACGACCAGAAGCACCCCATCACCCTGTCGCGGGCCTATTACTGGCAGGCGCGGGCGGCCGAGGCCATG GGCGACGGCGGCCGTGCCCGCGAGCGCTTCCAGGCAGCGGCGCGCTTCCCGGCCACCTATTACGGCCAGCTCTCGCGCAC CAAGCTCGGCATGGCGCCGGTGGTGCTGCGCTCGCCCTCGCCTTCGTTCGACAGCCGCAACACCTTCGCCCGGCTGGAGC CGGTGAAGGCCATCCGCATGCTTTATGCGGTGGGCGAGCGCGACATTCCCCTGACCATCTATTACGACCTCGCCTGGCGC ATGGAGGATCCGGCCCAGCTTGCCATGCTGGCCGACCTCGCCGAGGCAAATGGCGACGCCCGCGGCGCGCTGGTAGTAGG CAAGGAGGGCCTCGCGGAGGGTCATCCGCTGGAGGCGGAAGCCTTCCCCACCTTCGGCCTGCCCAGCTACACCCCCATCG GCAATCCGGTGGACAAGGCGGCGATCTATGCGGTGGCGCGGCAGGAAAGCCAGTTCAACGCCCGCACGCTGTCCAGCGCC AAGGCCATGGGCCTGATGCAGGTGACGCCCGAGGCCGGCCGCGAGGTCACCAAGAAGACCGGCGTGCCCTTCAGCGAATC CCGGCTCATGAGCGACCAGTCCTACAACGTGCAGTTCGGCGCCGCCGAGTTGGGCGAGCTGGTGCAGAATTACGGCGGCA ACTACGTGCTGGTGTTCGCCGCCTACAATGCCGGGCGCGGCAGCGTGGCCAAGTGGATCCAGCGCTACGGCGACCCGCGC GACCCGGACGTGGACGTGGTGGACTGGGTGGAATCCATCCCCTTCTCCGAGACCCGCAACTATGTGCAGCGGGTGATGGA GAACTACCAAGTCTACAAGGTACGCTTCAACATCCCCTCCAAGCTGCAGATGGAAGCCGACCTGCGCGGCGGCCGCTGA
Upstream 100 bases:
>100_bases TCAATCTGGTTAGGGTTTCGTCAACACGGCTGGCGGAACATGGGTGAGGGGGAGCCGCAAGATCACATCAAACGACACCA ACCCGCCGCGAGGACATTGC
Downstream 100 bases:
>100_bases GGCGGACGGGCTGTTCAAAGGGGCGGGCCTCCAATGACGACCAACATCTCGCCCTGATGCGATGCGCCCCTCTCCCGCTT GCGGGGGAGGGTTCACCAGC
Product: lytic transglycosylase catalytic
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 772; Mature: 771
Protein sequence:
>772_residues MSPVSSLISVSALALALAWSGAMPALAETTPTAKPASAKDSAKDAKAKDSKAKDTHSAKDTKAKDAKAHDSKAKDAKAKD TKPTGNAKASADAKSGKDAKAHKDAAKPSTSKPSGKPATARAPAATPQVAPTLGASSNIPGGDLAALKVAVNAAKNGRAA EAMGAAQQLDDPAARSLVTWLVIRHAPNDLGFDAINQFLKDKPGWPTQNTLRRRAERVLFQENRDPAKARDFFAEQPPLS GEGKIALARYLVAAGNRSDAADWVREAWREDELNESFESKIIDEFSGFLTRTDHKLRADRFSYKPDPDRALRAAARAGSD IVALTKARMAIAKKDSNGEKLLAQVPFNLSSDPAYLFAKSQLARRADKPQDAARALLAGATSDQVRADPDEWWIERRLVA RELLDAGDFQTAYKVAATGVPPKADNYRAEQHFTAGWIALRFLKDPRTAAQHFAKIDDDQKHPITLSRAYYWQARAAEAM GDGGRARERFQAAARFPATYYGQLSRTKLGMAPVVLRSPSPSFDSRNTFARLEPVKAIRMLYAVGERDIPLTIYYDLAWR MEDPAQLAMLADLAEANGDARGALVVGKEGLAEGHPLEAEAFPTFGLPSYTPIGNPVDKAAIYAVARQESQFNARTLSSA KAMGLMQVTPEAGREVTKKTGVPFSESRLMSDQSYNVQFGAAELGELVQNYGGNYVLVFAAYNAGRGSVAKWIQRYGDPR DPDVDVVDWVESIPFSETRNYVQRVMENYQVYKVRFNIPSKLQMEADLRGGR
Sequences:
>Translated_772_residues MSPVSSLISVSALALALAWSGAMPALAETTPTAKPASAKDSAKDAKAKDSKAKDTHSAKDTKAKDAKAHDSKAKDAKAKD TKPTGNAKASADAKSGKDAKAHKDAAKPSTSKPSGKPATARAPAATPQVAPTLGASSNIPGGDLAALKVAVNAAKNGRAA EAMGAAQQLDDPAARSLVTWLVIRHAPNDLGFDAINQFLKDKPGWPTQNTLRRRAERVLFQENRDPAKARDFFAEQPPLS GEGKIALARYLVAAGNRSDAADWVREAWREDELNESFESKIIDEFSGFLTRTDHKLRADRFSYKPDPDRALRAAARAGSD IVALTKARMAIAKKDSNGEKLLAQVPFNLSSDPAYLFAKSQLARRADKPQDAARALLAGATSDQVRADPDEWWIERRLVA RELLDAGDFQTAYKVAATGVPPKADNYRAEQHFTAGWIALRFLKDPRTAAQHFAKIDDDQKHPITLSRAYYWQARAAEAM GDGGRARERFQAAARFPATYYGQLSRTKLGMAPVVLRSPSPSFDSRNTFARLEPVKAIRMLYAVGERDIPLTIYYDLAWR MEDPAQLAMLADLAEANGDARGALVVGKEGLAEGHPLEAEAFPTFGLPSYTPIGNPVDKAAIYAVARQESQFNARTLSSA KAMGLMQVTPEAGREVTKKTGVPFSESRLMSDQSYNVQFGAAELGELVQNYGGNYVLVFAAYNAGRGSVAKWIQRYGDPR DPDVDVVDWVESIPFSETRNYVQRVMENYQVYKVRFNIPSKLQMEADLRGGR >Mature_771_residues SPVSSLISVSALALALAWSGAMPALAETTPTAKPASAKDSAKDAKAKDSKAKDTHSAKDTKAKDAKAHDSKAKDAKAKDT KPTGNAKASADAKSGKDAKAHKDAAKPSTSKPSGKPATARAPAATPQVAPTLGASSNIPGGDLAALKVAVNAAKNGRAAE AMGAAQQLDDPAARSLVTWLVIRHAPNDLGFDAINQFLKDKPGWPTQNTLRRRAERVLFQENRDPAKARDFFAEQPPLSG EGKIALARYLVAAGNRSDAADWVREAWREDELNESFESKIIDEFSGFLTRTDHKLRADRFSYKPDPDRALRAAARAGSDI VALTKARMAIAKKDSNGEKLLAQVPFNLSSDPAYLFAKSQLARRADKPQDAARALLAGATSDQVRADPDEWWIERRLVAR ELLDAGDFQTAYKVAATGVPPKADNYRAEQHFTAGWIALRFLKDPRTAAQHFAKIDDDQKHPITLSRAYYWQARAAEAMG DGGRARERFQAAARFPATYYGQLSRTKLGMAPVVLRSPSPSFDSRNTFARLEPVKAIRMLYAVGERDIPLTIYYDLAWRM EDPAQLAMLADLAEANGDARGALVVGKEGLAEGHPLEAEAFPTFGLPSYTPIGNPVDKAAIYAVARQESQFNARTLSSAK AMGLMQVTPEAGREVTKKTGVPFSESRLMSDQSYNVQFGAAELGELVQNYGGNYVLVFAAYNAGRGSVAKWIQRYGDPRD PDVDVVDWVESIPFSETRNYVQRVMENYQVYKVRFNIPSKLQMEADLRGGR
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=134, Percent_Identity=36.5671641791045, Blast_Score=85, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 83941; Mature: 83810
Theoretical pI: Translated: 9.91; Mature: 9.91
Prosite motif: PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSPVSSLISVSALALALAWSGAMPALAETTPTAKPASAKDSAKDAKAKDSKAKDTHSAKD CCHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC TKAKDAKAHDSKAKDAKAKDTKPTGNAKASADAKSGKDAKAHKDAAKPSTSKPSGKPATA CCCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC RAPAATPQVAPTLGASSNIPGGDLAALKVAVNAAKNGRAAEAMGAAQQLDDPAARSLVTW CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH LVIRHAPNDLGFDAINQFLKDKPGWPTQNTLRRRAERVLFQENRDPAKARDFFAEQPPLS HHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC GEGKIALARYLVAAGNRSDAADWVREAWREDELNESFESKIIDEFSGFLTRTDHKLRADR CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH FSYKPDPDRALRAAARAGSDIVALTKARMAIAKKDSNGEKLLAQVPFNLSSDPAYLFAKS CCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH QLARRADKPQDAARALLAGATSDQVRADPDEWWIERRLVARELLDAGDFQTAYKVAATGV HHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC PPKADNYRAEQHFTAGWIALRFLKDPRTAAQHFAKIDDDQKHPITLSRAYYWQARAAEAM CCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHH GDGGRARERFQAAARFPATYYGQLSRTKLGMAPVVLRSPSPSFDSRNTFARLEPVKAIRM CCCHHHHHHHHHHHHCCHHHHCCHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH LYAVGERDIPLTIYYDLAWRMEDPAQLAMLADLAEANGDARGALVVGKEGLAEGHPLEAE HHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC AFPTFGLPSYTPIGNPVDKAAIYAVARQESQFNARTLSSAKAMGLMQVTPEAGREVTKKT CCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHC GVPFSESRLMSDQSYNVQFGAAELGELVQNYGGNYVLVFAAYNAGRGSVAKWIQRYGDPR CCCCHHHHHCCCCCCCEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCC DPDVDVVDWVESIPFSETRNYVQRVMENYQVYKVRFNIPSKLQMEADLRGGR CCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCC >Mature Secondary Structure SPVSSLISVSALALALAWSGAMPALAETTPTAKPASAKDSAKDAKAKDSKAKDTHSAKD CHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCC TKAKDAKAHDSKAKDAKAKDTKPTGNAKASADAKSGKDAKAHKDAAKPSTSKPSGKPATA CCCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCC RAPAATPQVAPTLGASSNIPGGDLAALKVAVNAAKNGRAAEAMGAAQQLDDPAARSLVTW CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHH LVIRHAPNDLGFDAINQFLKDKPGWPTQNTLRRRAERVLFQENRDPAKARDFFAEQPPLS HHHHCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCC GEGKIALARYLVAAGNRSDAADWVREAWREDELNESFESKIIDEFSGFLTRTDHKLRADR CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH FSYKPDPDRALRAAARAGSDIVALTKARMAIAKKDSNGEKLLAQVPFNLSSDPAYLFAKS CCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHH QLARRADKPQDAARALLAGATSDQVRADPDEWWIERRLVARELLDAGDFQTAYKVAATGV HHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCC PPKADNYRAEQHFTAGWIALRFLKDPRTAAQHFAKIDDDQKHPITLSRAYYWQARAAEAM CCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHH GDGGRARERFQAAARFPATYYGQLSRTKLGMAPVVLRSPSPSFDSRNTFARLEPVKAIRM CCCHHHHHHHHHHHHCCHHHHCCHHHHHCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH LYAVGERDIPLTIYYDLAWRMEDPAQLAMLADLAEANGDARGALVVGKEGLAEGHPLEAE HHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCC AFPTFGLPSYTPIGNPVDKAAIYAVARQESQFNARTLSSAKAMGLMQVTPEAGREVTKKT CCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCEEEECCHHHHHHHHHC GVPFSESRLMSDQSYNVQFGAAELGELVQNYGGNYVLVFAAYNAGRGSVAKWIQRYGDPR CCCCHHHHHCCCCCCCEEECHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHCCCCC DPDVDVVDWVESIPFSETRNYVQRVMENYQVYKVRFNIPSKLQMEADLRGGR CCCCHHHHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]