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The map label for this gene is ctrD [H]

Identifier: 154247735

GI number: 154247735

Start: 4225576

End: 4226232

Strand: Reverse

Name: ctrD [H]

Synonym: Xaut_3811

Alternate gene names: 154247735

Gene position: 4226232-4225576 (Counterclockwise)

Preceding gene: 154247736

Following gene: 154247734

Centisome position: 79.61

GC content: 64.08

Gene sequence:

>657_bases
ATGATCGTCACCGACCGCCTCACCAAGACCTACTGGACCCACCTGCGGCGCAAGGTGGTGCTCAGCAACGTCTCCGTCAC
CCTCGATCCGCGGGTGAGCTACGGGCTGCTCGGGCAGAACGGGGCCGGCAAGTCCACCTTCCTGAAGCTGATCGCCGGCA
CCGAGGCGCCCACCTCCGGACGCATCTACCGCTCGGTGCGCCTGTCCTGGCCGCTGGGCTTTGCCGGCGGCTTTCACCCG
CAGATGACGGGGCGGGAGAACATCCGCTTTCTCGCCCGGGTCTATGATGCGGACATTGCCGAGGTGACCGATTTCGTGGA
GGATTTTTCCGAGCTGGGGCGCGACCTCGACATGCCGGTGAAGACCTATTCCTCGGGCATGACCTCGCGCCTCGCCTTTG
CGGTATCCATGGCCATCGAGTTCGATTTCTACCTGGTGGACGAGATCACGGCGGTCGGCGATTCCCGCTTCCAGCTCAAG
TGCGCGCAGGCCTTTGCCGAGCGGCGCACGCGCGCGGGCATGATCATGGCCTCCCACTCCACCGGCACCATCAAGGATTA
TTGTACCGCCGGCATGGTGTTGCAGAAGGGTCGGCTGATGATCTTCGAGGATGTGAACGACGCCATCGAGGTTCACCGCC
AGGCCATGGAGGCCTGA

Upstream 100 bases:

>100_bases
CTGGATGCCGCTGGCGGCGGCGCTGGCCTTCTGCCTCCTCTGGCTCGTCATCGTCTCGGCGTTCGAGCTGATGCGCCACC
TGAAGGCTTGAGGCTGCACG

Downstream 100 bases:

>100_bases
GCATGACCAACGCCCCCCGCCCCACCCGCTTCGCCGGTGAGAGCTGGCGCACCGCCTCGGCCATGCACGCCCGCGTGGTC
GGCGCGGTGATCATGCGCGA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: Capsular-polysaccharide-transporting ATPase [H]

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MIVTDRLTKTYWTHLRRKVVLSNVSVTLDPRVSYGLLGQNGAGKSTFLKLIAGTEAPTSGRIYRSVRLSWPLGFAGGFHP
QMTGRENIRFLARVYDADIAEVTDFVEDFSELGRDLDMPVKTYSSGMTSRLAFAVSMAIEFDFYLVDEITAVGDSRFQLK
CAQAFAERRTRAGMIMASHSTGTIKDYCTAGMVLQKGRLMIFEDVNDAIEVHRQAMEA

Sequences:

>Translated_218_residues
MIVTDRLTKTYWTHLRRKVVLSNVSVTLDPRVSYGLLGQNGAGKSTFLKLIAGTEAPTSGRIYRSVRLSWPLGFAGGFHP
QMTGRENIRFLARVYDADIAEVTDFVEDFSELGRDLDMPVKTYSSGMTSRLAFAVSMAIEFDFYLVDEITAVGDSRFQLK
CAQAFAERRTRAGMIMASHSTGTIKDYCTAGMVLQKGRLMIFEDVNDAIEVHRQAMEA
>Mature_218_residues
MIVTDRLTKTYWTHLRRKVVLSNVSVTLDPRVSYGLLGQNGAGKSTFLKLIAGTEAPTSGRIYRSVRLSWPLGFAGGFHP
QMTGRENIRFLARVYDADIAEVTDFVEDFSELGRDLDMPVKTYSSGMTSRLAFAVSMAIEFDFYLVDEITAVGDSRFQLK
CAQAFAERRTRAGMIMASHSTGTIKDYCTAGMVLQKGRLMIFEDVNDAIEVHRQAMEA

Specific function: Putative ATP-binding protein, and an energy-coupling component of capsule polysaccharide export apparatus [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27477115, Length=205, Percent_Identity=31.7073170731707, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI27436953, Length=204, Percent_Identity=27.9411764705882, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI6005701, Length=199, Percent_Identity=30.6532663316583, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI45446740, Length=215, Percent_Identity=25.1162790697674, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI47078218, Length=215, Percent_Identity=25.1162790697674, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1789751, Length=166, Percent_Identity=28.9156626506024, Blast_Score=62, Evalue=2e-11,
Organism=Drosophila melanogaster, GI116007184, Length=198, Percent_Identity=29.7979797979798, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI221500365, Length=198, Percent_Identity=29.7979797979798, Blast_Score=67, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: NA

EC number: =3.6.3.38 [H]

Molecular weight: Translated: 24328; Mature: 24328

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVTDRLTKTYWTHLRRKVVLSNVSVTLDPRVSYGLLGQNGAGKSTFLKLIAGTEAPTSG
CCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCHHHHHHHHCCCCCCCCC
RIYRSVRLSWPLGFAGGFHPQMTGRENIRFLARVYDADIAEVTDFVEDFSELGRDLDMPV
CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCH
KTYSSGMTSRLAFAVSMAIEFDFYLVDEITAVGDSRFQLKCAQAFAERRTRAGMIMASHS
HHHHCCHHHHHHHHHHHHHEECEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECC
TGTIKDYCTAGMVLQKGRLMIFEDVNDAIEVHRQAMEA
CCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC
>Mature Secondary Structure
MIVTDRLTKTYWTHLRRKVVLSNVSVTLDPRVSYGLLGQNGAGKSTFLKLIAGTEAPTSG
CCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCCHHHHHHHHCCCCCCCCC
RIYRSVRLSWPLGFAGGFHPQMTGRENIRFLARVYDADIAEVTDFVEDFSELGRDLDMPV
CEEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCH
KTYSSGMTSRLAFAVSMAIEFDFYLVDEITAVGDSRFQLKCAQAFAERRTRAGMIMASHS
HHHHCCHHHHHHHHHHHHHEECEEEEEHHHHCCCCHHHHHHHHHHHHHHHHCCEEEEECC
TGTIKDYCTAGMVLQKGRLMIFEDVNDAIEVHRQAMEA
CCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10761919 [H]