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The map label for this gene is omp [H]

Identifier: 154247107

GI number: 154247107

Start: 3523791

End: 3524228

Strand: Direct

Name: omp [H]

Synonym: Xaut_3178

Alternate gene names: 154247107

Gene position: 3523791-3524228 (Clockwise)

Preceding gene: 154247106

Following gene: 154247116

Centisome position: 66.37

GC content: 72.6

Gene sequence:

>438_bases
ATGCCCGCCCGCATGGTTTGCGTCCGCTTCTGTGCCCTCGCCGTCCTCGCTGCCGCCCTGGGCGGCTGTGCGACGGAGAC
CGGGCCGGGGCGTTCCATCGCGGCCCAGGCGGCGCTGCCCACGGCCCCGGTCATGAGCGGGGCGGTCTCGGGCGGGCTGA
TCAGCGGCGGCATCGGCAATGGCCTCGACGAGGGCGACCGGCGCCGCGCTTATGACGCGGAAATCTCGGCCCTGGAAACC
GGCGGCCCCGGCTATCCCATCGGCTGGAAGGGCGAGAACGGCACCCACGGTACGGTCGTGGCCGGGCCGCCCTATAATCG
CGCAGGCTTCCAGAGCTGCCGCGACTATTCCCACACCATCTACATCGACAACCGCCCGCAGATCGCGCGCGGTGCCGCCT
GCCGCGCGGCGGACGGGCACTGGCAGCCGGTGAGCTGA

Upstream 100 bases:

>100_bases
GGCCGTGTCGCGAAGGCTGTTTTCAGGCGGCCCGCGACCGCTTAAGAGGAAGGGGAGCCTTGGTGTCGCCCTATTGTCCC
CGCGCGTGAGACCCCATCCG

Downstream 100 bases:

>100_bases
GGTAAGGGTCCAAGCTCGGCAGGAAGGCGCCCGCCGCCTGAGGCGATGCGAGCGCTCCTTTTAAGCGGCGCGGGACGATC
AGTAGGACATGAACAGGGGG

Product: LipA a lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MPARMVCVRFCALAVLAAALGGCATETGPGRSIAAQAALPTAPVMSGAVSGGLISGGIGNGLDEGDRRRAYDAEISALET
GGPGYPIGWKGENGTHGTVVAGPPYNRAGFQSCRDYSHTIYIDNRPQIARGAACRAADGHWQPVS

Sequences:

>Translated_145_residues
MPARMVCVRFCALAVLAAALGGCATETGPGRSIAAQAALPTAPVMSGAVSGGLISGGIGNGLDEGDRRRAYDAEISALET
GGPGYPIGWKGENGTHGTVVAGPPYNRAGFQSCRDYSHTIYIDNRPQIARGAACRAADGHWQPVS
>Mature_144_residues
PARMVCVRFCALAVLAAALGGCATETGPGRSIAAQAALPTAPVMSGAVSGGLISGGIGNGLDEGDRRRAYDAEISALETG
GPGYPIGWKGENGTHGTVVAGPPYNRAGFQSCRDYSHTIYIDNRPQIARGAACRAADGHWQPVS

Specific function: Unknown

COG id: COG4520

COG function: function code M; Surface antigen

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rickettsiale 17 kDa surface antigen family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816
- InterPro:   IPR016364 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 14786; Mature: 14655

Theoretical pI: Translated: 7.86; Mature: 7.86

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPARMVCVRFCALAVLAAALGGCATETGPGRSIAAQAALPTAPVMSGAVSGGLISGGIGN
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHCCCCCCHHHHCCCCCCEEECCCCC
GLDEGDRRRAYDAEISALETGGPGYPIGWKGENGTHGTVVAGPPYNRAGFQSCRDYSHTI
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCEE
YIDNRPQIARGAACRAADGHWQPVS
EECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PARMVCVRFCALAVLAAALGGCATETGPGRSIAAQAALPTAPVMSGAVSGGLISGGIGN
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEHHCCCCCCHHHHCCCCCCEEECCCCC
GLDEGDRRRAYDAEISALETGGPGYPIGWKGENGTHGTVVAGPPYNRAGFQSCRDYSHTI
CCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCCEE
YIDNRPQIARGAACRAADGHWQPVS
EECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2768201; 11557893 [H]