| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is yfgE [C]
Identifier: 154247057
GI number: 154247057
Start: 3470063
End: 3470797
Strand: Reverse
Name: yfgE [C]
Synonym: Xaut_3128
Alternate gene names: 154247057
Gene position: 3470797-3470063 (Counterclockwise)
Preceding gene: 154247058
Following gene: 154247056
Centisome position: 65.38
GC content: 72.24
Gene sequence:
>735_bases ATGGCAGAGCGCGACGGACGTCCGCGCCAGCTTCCCCTCGACCTGCCGGCCTACCCGGCGCTCCGGCGCGAGGATTTCCT CGCAGCGCCCGGCAACGCGGCCGCCCTCGCCCTCATCGACGCCTTTCCCGAATGGCCGGCCCGGGTGGTGTGCATCGTGG GGCCGGAGGGCGCTGGAAAGAGCCACCTTTCGGCGATCTTCGCCGAGCGCTCCGGCGCGCGGACCCTCGACGCCCGCGCC CTGACCCGCGAAGGCGTGCCCGAGGCCCTCGCCAGCGGCGCCCTGGTACTGGAGGACCTTTCGGCCGGCACCTTCAGCGA GGCCGCCCTGTTCCACCTGCTCAACCTCGCCCGCGAGCAGCAGGCCTACCTGCTGATGACCGCGCGCACGCCGCCCTCAA GCTTCAGTCTCGCCACCGCCGACCTCGCCTCGCGGCTGCGCGCCGTGCCGGTGTTCGAGATCGCGCCTGCGGACGACGCC CTGCTGGCGGCGGTGCTGGTGAAGCTGTTCGCGGATCGCCAGCTTTCGGTGGATGAAGCCACGGTCCAGTACCTCCTCAT GCGCATGCAGCGCACCGTGGCCGGCGCCAAGCGCATCGTCGATGCGCTGGATACGGCCGCCCTCGCAGCCCGGCGCCCGG TGACGCGGGCGCTGGCGGCCCAGGTGTTGAAGGAGCTCGGCGAGGAACTGGGCGAAGACCCGCCCTTCCCCGACGTCCAC GGGGAAGAAGACTGA
Upstream 100 bases:
>100_bases CGGGGGTGCTGGTGCGCTTCGTGATCACCCGCTACATGCAGTCGGCGCTGTACCAGGGCACCCCGGACGACGCCCTGCCA CCACCGGGGACACCCTGAGC
Downstream 100 bases:
>100_bases TACCGCCAGGGCGTCATAGAGTAGTCATGTAACGCGGCCATGGTCCGGCCGAAACGCGGGGGACCGAGCATGGGTATGAA CGAGGCTGCAGCTCTCGCGG
Product: chromosomal replication initiator, DnaA
Products: NA
Alternate protein names: DNAA-Related Protein; Regulatory Inactivation Of DNAA Hda Protein; Chromosomal Replication Initiator Protein DNAA; Chromosomal Replication Initiator; DNAA-Like Protein; Chromosomal Replication Initiator DNAa; DNA Replication Initiation ATPase Protein; DNA Replication Initiation ATPase; DNAA-Like Protein Hda
Number of amino acids: Translated: 244; Mature: 243
Protein sequence:
>244_residues MAERDGRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGKSHLSAIFAERSGARTLDARA LTREGVPEALASGALVLEDLSAGTFSEAALFHLLNLAREQQAYLLMTARTPPSSFSLATADLASRLRAVPVFEIAPADDA LLAAVLVKLFADRQLSVDEATVQYLLMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKELGEELGEDPPFPDVH GEED
Sequences:
>Translated_244_residues MAERDGRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGKSHLSAIFAERSGARTLDARA LTREGVPEALASGALVLEDLSAGTFSEAALFHLLNLAREQQAYLLMTARTPPSSFSLATADLASRLRAVPVFEIAPADDA LLAAVLVKLFADRQLSVDEATVQYLLMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKELGEELGEDPPFPDVH GEED >Mature_243_residues AERDGRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGKSHLSAIFAERSGARTLDARAL TREGVPEALASGALVLEDLSAGTFSEAALFHLLNLAREQQAYLLMTARTPPSSFSLATADLASRLRAVPVFEIAPADDAL LAAVLVKLFADRQLSVDEATVQYLLMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKELGEELGEDPPFPDVHG EED
Specific function: Unknown
COG id: COG0593
COG function: function code L; ATPase involved in DNA replication initiation
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26069; Mature: 25938
Theoretical pI: Translated: 4.68; Mature: 4.68
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAERDGRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCH SHLSAIFAERSGARTLDARALTREGVPEALASGALVLEDLSAGTFSEAALFHLLNLAREQ HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHCCCCEEHHCCCCCHHHHHHHHHHHHHHHC QAYLLMTARTPPSSFSLATADLASRLRAVPVFEIAPADDALLAAVLVKLFADRQLSVDEA CEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHH TVQYLLMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKELGEELGEDPPFPDVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCC GEED CCCC >Mature Secondary Structure AERDGRPRQLPLDLPAYPALRREDFLAAPGNAAALALIDAFPEWPARVVCIVGPEGAGK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCCCH SHLSAIFAERSGARTLDARALTREGVPEALASGALVLEDLSAGTFSEAALFHLLNLAREQ HHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHCCCCEEHHCCCCCHHHHHHHHHHHHHHHC QAYLLMTARTPPSSFSLATADLASRLRAVPVFEIAPADDALLAAVLVKLFADRQLSVDEA CEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHCCCCCHHHH TVQYLLMRMQRTVAGAKRIVDALDTAALAARRPVTRALAAQVLKELGEELGEDPPFPDVH HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCC GEED CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA