| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is ttuD [H]
Identifier: 154247033
GI number: 154247033
Start: 3443752
End: 3445008
Strand: Reverse
Name: ttuD [H]
Synonym: Xaut_3104
Alternate gene names: 154247033
Gene position: 3445008-3443752 (Counterclockwise)
Preceding gene: 154247036
Following gene: 154247032
Centisome position: 64.89
GC content: 69.85
Gene sequence:
>1257_bases ATGACCTCTGCGACCCTGTCCGACCGGGACATCCTCCTCGCTTTGTTCGATGCAGGGCTCGCCGCAGCGCTTCCGGAAGG AAAGTTCAAGGATCACCTGCCCGCCCCGCCGAAGGGCCGCACCATTGTCATCGGCGCCGGCAAGGCCTCGGCCCGCATGG CCCGCGCCTTCGAGGAAGAGTGGGGCCACCCATGCGAGGGGCTTATCGTCACCCGCTACGGCCATGGCTGCGAGACCCGC CATATCGAGATCGTGGAAGCCTCCCACCCGGTACCGGACCAGGCCGGGCTCGACGCCGCCCGCCGCATCCTGGAGCTGGC GAAGGGCGCGGGGCCGGACGATCTGGTGGTCTGCCTCATGTCGGGGGGCGCCTCCTCGCTCCTCACCATGCCGGCGGAGG GTCTGACCCTGGCCGACAAGCAGGCGCTGAACGGCGCGTTGCTGAAATCCGGCGCGCCCATCGGCGTGATGAACCAGGTG CGCAAATCGCTCTCCGCCATCAAGGGCGGGCGCCTTGCCGCCGCCATCGCCCCGGCGCGGGCGGTGACCTACCTCATCTC CGACGTGCCGGGCGATGACCCCGGCACCATCGGCTCCGGCCCCACCATTCCCGAGGCCTCCGACCCGGAGGGCGTGCTCG GCCTGATGCGCGCGTGGGGCATCGAGGTGACGGACAAGCTGGAGCAGGTCATCCGCGCCAACACCGTCCCCGGCGATGCC CTCCCCGGCCAGGAGGTGCACATGATTGCCACCCCGCTGATGGCGCTGAAAGCGGCGGAGGCGAAGGCGCGCGAACTCGG CATCACCCCCCTCATCCTCGGCGACGCGATCGAGGGCGAGGCGCGGGAGGCCGCCATCGTGTTCGCCGGCATCGCCAATT GCACCGCCTCCCACGGGCTTCCGGCGGCCGCGCCCTGCGTGCTGCTGTCCGGCGGCGAGACCACCGTGACCGTGCGCGGC AAGGGAAGGGGCGGACGCAGCGTGGAATTCCTGTTGGCCCTCGCCATCGCGCTGAAGGGCCGGGCCGGCATCTCCGCCGT CTCCTGCGATACGGACGGGGTGGACGGCACCGAGGACAATGCCGGCGCGTGGTTCGACGCCGCTATCCTGGAAGAGGCCG CTGCGCGCGGGCTGAAGCCCGCCGACTTCCTCGCCAACAATGACGGCTACAGCTTCTTCTCCGCCCTCGACCGGCTAGTG ATCACCGGCCCGACCTTGACGAACGTCAATGATTTCAGGGCGATCCTTGTGCGATAG
Upstream 100 bases:
>100_bases TGCCTTTCGTTTCCGGCTTATTGATCCCTTCCCGGGGGCCGGTTACAGCCGGGCCTGAAATGAATGAATGGCCCCAAAAG GCGGGCCGCGGGAGAACGCC
Downstream 100 bases:
>100_bases ACGCTGCCCCGGTTTCATTGCGGCGGGGCTGTGGCCAAGGCCTGCCCCTGCGGCGCAGCCGCGCTGCGCTGCGCGCATAC CGCGTCTTTTTCACATAAAA
Product: hydroxypyruvate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 418; Mature: 417
Protein sequence:
>418_residues MTSATLSDRDILLALFDAGLAAALPEGKFKDHLPAPPKGRTIVIGAGKASARMARAFEEEWGHPCEGLIVTRYGHGCETR HIEIVEASHPVPDQAGLDAARRILELAKGAGPDDLVVCLMSGGASSLLTMPAEGLTLADKQALNGALLKSGAPIGVMNQV RKSLSAIKGGRLAAAIAPARAVTYLISDVPGDDPGTIGSGPTIPEASDPEGVLGLMRAWGIEVTDKLEQVIRANTVPGDA LPGQEVHMIATPLMALKAAEAKARELGITPLILGDAIEGEAREAAIVFAGIANCTASHGLPAAAPCVLLSGGETTVTVRG KGRGGRSVEFLLALAIALKGRAGISAVSCDTDGVDGTEDNAGAWFDAAILEEAAARGLKPADFLANNDGYSFFSALDRLV ITGPTLTNVNDFRAILVR
Sequences:
>Translated_418_residues MTSATLSDRDILLALFDAGLAAALPEGKFKDHLPAPPKGRTIVIGAGKASARMARAFEEEWGHPCEGLIVTRYGHGCETR HIEIVEASHPVPDQAGLDAARRILELAKGAGPDDLVVCLMSGGASSLLTMPAEGLTLADKQALNGALLKSGAPIGVMNQV RKSLSAIKGGRLAAAIAPARAVTYLISDVPGDDPGTIGSGPTIPEASDPEGVLGLMRAWGIEVTDKLEQVIRANTVPGDA LPGQEVHMIATPLMALKAAEAKARELGITPLILGDAIEGEAREAAIVFAGIANCTASHGLPAAAPCVLLSGGETTVTVRG KGRGGRSVEFLLALAIALKGRAGISAVSCDTDGVDGTEDNAGAWFDAAILEEAAARGLKPADFLANNDGYSFFSALDRLV ITGPTLTNVNDFRAILVR >Mature_417_residues TSATLSDRDILLALFDAGLAAALPEGKFKDHLPAPPKGRTIVIGAGKASARMARAFEEEWGHPCEGLIVTRYGHGCETRH IEIVEASHPVPDQAGLDAARRILELAKGAGPDDLVVCLMSGGASSLLTMPAEGLTLADKQALNGALLKSGAPIGVMNQVR KSLSAIKGGRLAAAIAPARAVTYLISDVPGDDPGTIGSGPTIPEASDPEGVLGLMRAWGIEVTDKLEQVIRANTVPGDAL PGQEVHMIATPLMALKAAEAKARELGITPLILGDAIEGEAREAAIVFAGIANCTASHGLPAAAPCVLLSGGETTVTVRGK GRGGRSVEFLLALAIALKGRAGISAVSCDTDGVDGTEDNAGAWFDAAILEEAAARGLKPADFLANNDGYSFFSALDRLVI TGPTLTNVNDFRAILVR
Specific function: Degrades an unidentified toxic product from the first step of tartrate degradation [H]
COG id: COG2379
COG function: function code G; Putative glycerate kinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI31543063, Length=481, Percent_Identity=31.3929313929314, Blast_Score=177, Evalue=1e-44, Organism=Caenorhabditis elegans, GI193205461, Length=412, Percent_Identity=30.0970873786408, Blast_Score=130, Evalue=1e-30, Organism=Drosophila melanogaster, GI19920578, Length=374, Percent_Identity=31.8181818181818, Blast_Score=150, Evalue=1e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007835 [H]
Pfam domain/function: PF05161 MOFRL [H]
EC number: =1.1.1.81 [H]
Molecular weight: Translated: 42979; Mature: 42847
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSATLSDRDILLALFDAGLAAALPEGKFKDHLPAPPKGRTIVIGAGKASARMARAFEEE CCCCCCCCCCEEEEEHHCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH WGHPCEGLIVTRYGHGCETRHIEIVEASHPVPDQAGLDAARRILELAKGAGPDDLVVCLM HCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE SGGASSLLTMPAEGLTLADKQALNGALLKSGAPIGVMNQVRKSLSAIKGGRLAAAIAPAR CCCCCCEEECCCCCCEEHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHH AVTYLISDVPGDDPGTIGSGPTIPEASDPEGVLGLMRAWGIEVTDKLEQVIRANTVPGDA HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC LPGQEVHMIATPLMALKAAEAKARELGITPLILGDAIEGEAREAAIVFAGIANCTASHGL CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHCCCC PAAAPCVLLSGGETTVTVRGKGRGGRSVEFLLALAIALKGRAGISAVSCDTDGVDGTEDN CCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC AGAWFDAAILEEAAARGLKPADFLANNDGYSFFSALDRLVITGPTLTNVNDFRAILVR CCCHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHEECCCCCCCCCCCEEEEEC >Mature Secondary Structure TSATLSDRDILLALFDAGLAAALPEGKFKDHLPAPPKGRTIVIGAGKASARMARAFEEE CCCCCCCCCEEEEEHHCCHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHH WGHPCEGLIVTRYGHGCETRHIEIVEASHPVPDQAGLDAARRILELAKGAGPDDLVVCLM HCCCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEE SGGASSLLTMPAEGLTLADKQALNGALLKSGAPIGVMNQVRKSLSAIKGGRLAAAIAPAR CCCCCCEEECCCCCCEEHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHCCCCEEEHHHHHH AVTYLISDVPGDDPGTIGSGPTIPEASDPEGVLGLMRAWGIEVTDKLEQVIRANTVPGDA HHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC LPGQEVHMIATPLMALKAAEAKARELGITPLILGDAIEGEAREAAIVFAGIANCTASHGL CCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEEHHHHHHCCCC PAAAPCVLLSGGETTVTVRGKGRGGRSVEFLLALAIALKGRAGISAVSCDTDGVDGTEDN CCCCCEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCC AGAWFDAAILEEAAARGLKPADFLANNDGYSFFSALDRLVITGPTLTNVNDFRAILVR CCCHHHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHEECCCCCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7592429 [H]