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The map label for this gene is radC [C]

Identifier: 154246981

GI number: 154246981

Start: 3391001

End: 3391630

Strand: Reverse

Name: radC [C]

Synonym: Xaut_3052

Alternate gene names: 154246981

Gene position: 3391630-3391001 (Counterclockwise)

Preceding gene: 154246982

Following gene: 154246980

Centisome position: 63.89

GC content: 67.14

Gene sequence:

>630_bases
ATGGCCGAGGCGCCGGAAGACGGCCTGAACGAAGCGCCCCATTTCCATGGGCACCGCGACCGTCTCCGCGCGCGCTTCCG
TGAGGCCGGAGCGCAGGCCCTCGCGGACTATGAGCTGCTGGAGCTGGTGCTGTTCCGCGCCGTGCCGCGGCGGGACGTGA
AGCCCTTGGCCAAGGCGCTGGTGGACCGCTTCGGCTCCTTCGCCGAGGTGGTGGCAGCGCCCCCCGGGCTTCTGGCCGAA
GTGGCGGGCGTGAAGGACGCCATCATCACCGAGCTGAAGGTGGTGGAGGCGGCGGCCCAGCGACTGGCCAAGGGGCAGGT
GAAGCGCCGGCCGGTGCTGTCATCCTGGAGCGCGGTCATCGACTATTGCCGCACCGCCATGGCCTATGCGGACCGCGAGC
AGGTGCGCGTGCTGTTCCTCGACAAGCGCAACCAGCTCATCGCCGACGAAGTGCTGCAGACCGGCACCGTGGACCACGCC
CCGGTCTATCCGCGCGAGGTGGTGAAGCGGGCGCTGGAGGTCTCCGCCTCCGCCGTCATCCTCTTGCACAACCATCCCAC
TTGGCCTTTTCGATCACGTTCAATCACGCCACATCACCTTGAAACACAAGAGCTTTTAGGCTTGTCGTAG

Upstream 100 bases:

>100_bases
GTGGGCGTGACCGAGACCGGCGTCGAGATCTTCACTCTGAGCCCCAAGGGCTATCACCAGCCGCCCTACATCTCCGCCTG
AGGAAGAGCCGGACACGCTT

Downstream 100 bases:

>100_bases
AGTCGGTCATTGTGGCATATTGGGGTCGGTTTTAAGGGGATCAAGGCCCTTTTTGACCCCAGTCGCCGACCCCACGAACC
CGTCGAGCGACCCCAGTTGG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MAEAPEDGLNEAPHFHGHRDRLRARFREAGAQALADYELLELVLFRAVPRRDVKPLAKALVDRFGSFAEVVAAPPGLLAE
VAGVKDAIITELKVVEAAAQRLAKGQVKRRPVLSSWSAVIDYCRTAMAYADREQVRVLFLDKRNQLIADEVLQTGTVDHA
PVYPREVVKRALEVSASAVILLHNHPTWPFRSRSITPHHLETQELLGLS

Sequences:

>Translated_209_residues
MAEAPEDGLNEAPHFHGHRDRLRARFREAGAQALADYELLELVLFRAVPRRDVKPLAKALVDRFGSFAEVVAAPPGLLAE
VAGVKDAIITELKVVEAAAQRLAKGQVKRRPVLSSWSAVIDYCRTAMAYADREQVRVLFLDKRNQLIADEVLQTGTVDHA
PVYPREVVKRALEVSASAVILLHNHPTWPFRSRSITPHHLETQELLGLS
>Mature_208_residues
AEAPEDGLNEAPHFHGHRDRLRARFREAGAQALADYELLELVLFRAVPRRDVKPLAKALVDRFGSFAEVVAAPPGLLAEV
AGVKDAIITELKVVEAAAQRLAKGQVKRRPVLSSWSAVIDYCRTAMAYADREQVRVLFLDKRNQLIADEVLQTGTVDHAP
VYPREVVKRALEVSASAVILLHNHPTWPFRSRSITPHHLETQELLGLS

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=165, Percent_Identity=31.5151515151515, Blast_Score=94, Evalue=5e-21,
Organism=Escherichia coli, GI2367100, Length=75, Percent_Identity=56, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1788312, Length=75, Percent_Identity=49.3333333333333, Blast_Score=76, Evalue=1e-15,
Organism=Escherichia coli, GI1788997, Length=75, Percent_Identity=48, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 23248; Mature: 23117

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEAPEDGLNEAPHFHGHRDRLRARFREAGAQALADYELLELVLFRAVPRRDVKPLAKAL
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VDRFGSFAEVVAAPPGLLAEVAGVKDAIITELKVVEAAAQRLAKGQVKRRPVLSSWSAVI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DYCRTAMAYADREQVRVLFLDKRNQLIADEVLQTGTVDHAPVYPREVVKRALEVSASAVI
HHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEE
LLHNHPTWPFRSRSITPHHLETQELLGLS
EEECCCCCCCCCCCCCCCCCCHHHHHCCC
>Mature Secondary Structure 
AEAPEDGLNEAPHFHGHRDRLRARFREAGAQALADYELLELVLFRAVPRRDVKPLAKAL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
VDRFGSFAEVVAAPPGLLAEVAGVKDAIITELKVVEAAAQRLAKGQVKRRPVLSSWSAVI
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
DYCRTAMAYADREQVRVLFLDKRNQLIADEVLQTGTVDHAPVYPREVVKRALEVSASAVI
HHHHHHHHHCCHHHEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCEEE
LLHNHPTWPFRSRSITPHHLETQELLGLS
EEECCCCCCCCCCCCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA