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The map label for this gene is intF [C]

Identifier: 154246980

GI number: 154246980

Start: 3389640

End: 3390881

Strand: Reverse

Name: intF [C]

Synonym: Xaut_3051

Alternate gene names: 154246980

Gene position: 3390881-3389640 (Counterclockwise)

Preceding gene: 154246981

Following gene: 154246979

Centisome position: 63.87

GC content: 61.11

Gene sequence:

>1242_bases
GTGCCAAGCCTTACAGATGGAGAAATTCGCCGAGCCCTGAAGCAGGTGGAAACGACCGGCAAGCAGCTCAGCCTTGTCGA
TGGCGAGGGTCACGGAACCGGCCGGCTGGTCCTCGTGATGAAGCCTATGCCTACCCGTGTGACCGCAGACTGGATGGCGC
AGCAATGGCGCGATGAGAAGCGCCTCAAGAAGAAGCTCGGCTCGTATCCCTCGATGCCCCTCAGCAAGGCCCGCGAGATA
TTCAACCGCGACTTCGCGGAGCTGATCCAGAAAGGCCGTAGCATCAAGGTTGCCGGCGACACGCGACCGGGAACCGTCGC
CGACCTCTTCGAGGCGTATGTCGCCTACCTCAAGGAGGGCGGGAAGTCGTCCTGGAAGGAGGCGGAAAAGGGCCTCAACA
AGATCGCCGATACGCTCGGACGCAACCGCCCGGCCCGCGACATCGAACCGGATGAGATCACGGCGATCATCCGGCCCATC
TATGAACGCGGCAAGCGTTCAATGGCCGATCATGTGCGCAGCTACATTCGATCTGCCTTTAGCTGGGGCCTGAAATCCGA
GCACGATTATCGCTCCACCGCTGCGCGCCGCTTCCGGCTGACCTACAACCCCGCTGCGGGCATACCGACGGAACCCAAGA
CGATCGGAACGCGCTGGTTGAGCGAGGAAGAGTTCGTTCGACTCTATCGCTGGCTCGAATGCCCCGACACGCCGGTTCAT
CCTTCCTATGCCCGCGCCGTCCAGATCATCATGCTGACTGGCCAGAGGGTCGAGGAAATCGCCCGTCTCCATGTCGATCA
ATGGGATGCCAAGGAACGGATCATCGACTGGACCAAGACCAAAAACCTTCAGCCGCACGCTGTTCCGGTGCCCTTGTTGG
CCGCGGAACTGATCGAGTCGATTATCCCGAACGAACACGGCTGGTTCTTCCCCTCCGCCAAAGACCCGTCAAAGCCCGTC
AGCCACGGCACACTCTACAGCTTTATCTGGCGCCAGCGGGATCGCGGCGTGATCCCCCATGCGACCAACCGCGACCTCCG
TCGCACCTTCAAAACCTTGGCTGGCAAGGCGGGAGTCCCGAAGGAGATCCGCGACCGTCTCCAGAACCACGCCTTGCAGG
ATGTCAGCTCGAAGCACTACGACCGCTGGAACTACATGGTTGAGAAGCGTGCCGGCATGGCGAAGTGGGACAAGTTCGTC
CGAGCCATGCTCGCCAAGAAGCGCATGAAAGCGGCGGCATGA

Upstream 100 bases:

>100_bases
TTGGGGTCGGTTTTAAGGGGATCAAGGCCCTTTTTGACCCCAGTCGCCGACCCCACGAACCCGTCGAGCGACCCCAGTTG
GAAGCCGACGGAGAACCCCA

Downstream 100 bases:

>100_bases
GCCTCCGGCGCCTATAAAGAGGAAGTGAGAAACGACTATAATCGGCCTGGCGTTGCTGGCGACGCTGACCACGGCGACCG
CGGCCAAGGCCGATCCCTGC

Product: integrase family protein

Products: NA

Alternate protein names: Integrase; Phage Integrase; Phage Integrase Family Protein; Prophage Integrase; Site-Specific Recombinase Phage Integrase Family Protein; Symbiosis Island Integrase; Transposase; Phage-Like Integrase; Prbable Integrase; Phage Integrase/Recombinase Protein; Prophage CP4-Like Integrase; Phage Integrase Family Site Specific Recombinase

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MPSLTDGEIRRALKQVETTGKQLSLVDGEGHGTGRLVLVMKPMPTRVTADWMAQQWRDEKRLKKKLGSYPSMPLSKAREI
FNRDFAELIQKGRSIKVAGDTRPGTVADLFEAYVAYLKEGGKSSWKEAEKGLNKIADTLGRNRPARDIEPDEITAIIRPI
YERGKRSMADHVRSYIRSAFSWGLKSEHDYRSTAARRFRLTYNPAAGIPTEPKTIGTRWLSEEEFVRLYRWLECPDTPVH
PSYARAVQIIMLTGQRVEEIARLHVDQWDAKERIIDWTKTKNLQPHAVPVPLLAAELIESIIPNEHGWFFPSAKDPSKPV
SHGTLYSFIWRQRDRGVIPHATNRDLRRTFKTLAGKAGVPKEIRDRLQNHALQDVSSKHYDRWNYMVEKRAGMAKWDKFV
RAMLAKKRMKAAA

Sequences:

>Translated_413_residues
MPSLTDGEIRRALKQVETTGKQLSLVDGEGHGTGRLVLVMKPMPTRVTADWMAQQWRDEKRLKKKLGSYPSMPLSKAREI
FNRDFAELIQKGRSIKVAGDTRPGTVADLFEAYVAYLKEGGKSSWKEAEKGLNKIADTLGRNRPARDIEPDEITAIIRPI
YERGKRSMADHVRSYIRSAFSWGLKSEHDYRSTAARRFRLTYNPAAGIPTEPKTIGTRWLSEEEFVRLYRWLECPDTPVH
PSYARAVQIIMLTGQRVEEIARLHVDQWDAKERIIDWTKTKNLQPHAVPVPLLAAELIESIIPNEHGWFFPSAKDPSKPV
SHGTLYSFIWRQRDRGVIPHATNRDLRRTFKTLAGKAGVPKEIRDRLQNHALQDVSSKHYDRWNYMVEKRAGMAKWDKFV
RAMLAKKRMKAAA
>Mature_412_residues
PSLTDGEIRRALKQVETTGKQLSLVDGEGHGTGRLVLVMKPMPTRVTADWMAQQWRDEKRLKKKLGSYPSMPLSKAREIF
NRDFAELIQKGRSIKVAGDTRPGTVADLFEAYVAYLKEGGKSSWKEAEKGLNKIADTLGRNRPARDIEPDEITAIIRPIY
ERGKRSMADHVRSYIRSAFSWGLKSEHDYRSTAARRFRLTYNPAAGIPTEPKTIGTRWLSEEEFVRLYRWLECPDTPVHP
SYARAVQIIMLTGQRVEEIARLHVDQWDAKERIIDWTKTKNLQPHAVPVPLLAAELIESIIPNEHGWFFPSAKDPSKPVS
HGTLYSFIWRQRDRGVIPHATNRDLRRTFKTLAGKAGVPKEIRDRLQNHALQDVSSKHYDRWNYMVEKRAGMAKWDKFVR
AMLAKKRMKAAA

Specific function: Integrase Is Necessary For Integration Of The Phage Into The Host Genome By Site-Specific Recombination. In Conjunction With Excisionase, Integrase Is Also Necessary For Excision Of The Prophage From The Host Genome. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47407; Mature: 47276

Theoretical pI: Translated: 10.58; Mature: 10.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSLTDGEIRRALKQVETTGKQLSLVDGEGHGTGRLVLVMKPMPTRVTADWMAQQWRDEK
CCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
RLKKKLGSYPSMPLSKAREIFNRDFAELIQKGRSIKVAGDTRPGTVADLFEAYVAYLKEG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
GKSSWKEAEKGLNKIADTLGRNRPARDIEPDEITAIIRPIYERGKRSMADHVRSYIRSAF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SWGLKSEHDYRSTAARRFRLTYNPAAGIPTEPKTIGTRWLSEEEFVRLYRWLECPDTPVH
HCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCC
PSYARAVQIIMLTGQRVEEIARLHVDQWDAKERIIDWTKTKNLQPHAVPVPLLAAELIES
CHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
IIPNEHGWFFPSAKDPSKPVSHGTLYSFIWRQRDRGVIPHATNRDLRRTFKTLAGKAGVP
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
KEIRDRLQNHALQDVSSKHYDRWNYMVEKRAGMAKWDKFVRAMLAKKRMKAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PSLTDGEIRRALKQVETTGKQLSLVDGEGHGTGRLVLVMKPMPTRVTADWMAQQWRDEK
CCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
RLKKKLGSYPSMPLSKAREIFNRDFAELIQKGRSIKVAGDTRPGTVADLFEAYVAYLKEG
HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHC
GKSSWKEAEKGLNKIADTLGRNRPARDIEPDEITAIIRPIYERGKRSMADHVRSYIRSAF
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SWGLKSEHDYRSTAARRFRLTYNPAAGIPTEPKTIGTRWLSEEEFVRLYRWLECPDTPVH
HCCCCCCCHHHHHHHHHEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCC
PSYARAVQIIMLTGQRVEEIARLHVDQWDAKERIIDWTKTKNLQPHAVPVPLLAAELIES
CHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHH
IIPNEHGWFFPSAKDPSKPVSHGTLYSFIWRQRDRGVIPHATNRDLRRTFKTLAGKAGVP
HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCC
KEIRDRLQNHALQDVSSKHYDRWNYMVEKRAGMAKWDKFVRAMLAKKRMKAAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA