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The map label for this gene is araC [C]

Identifier: 154246636

GI number: 154246636

Start: 2985342

End: 2986235

Strand: Direct

Name: araC [C]

Synonym: Xaut_2696

Alternate gene names: 154246636

Gene position: 2985342-2986235 (Clockwise)

Preceding gene: 154246630

Following gene: 154246647

Centisome position: 56.23

GC content: 65.32

Gene sequence:

>894_bases
ATGCTGCACTTGCGAATGACACGGCAAAATGTGATCCCGAGCTTCTTTCTTTACGACGAAGCCTTGGCAGATGTGGATCT
CGACTTCCTCCATGTGGAAGCCATCCGGATCCGCTCAAGCGTGCATGATTGGACGATCCGTCCACATGCCCATCCCGAGC
ACGTCCAGTTCCTGTTCGTGACCGAGGGCGGTGGGCGGATCCGCGTGGAGGATGACGAGTGGCAGCTTGATCCGCCCACG
GTGGTGGTCATCCCCCCGACGGCGGTCCACGAAATCCGCTTTGAACCGGGCTCGGACGGCTTCGCGCTTACGATCGCCGC
CTCCTACGTGACGGCGATGGCGCAGACGGATCCCGCATTTGCCGATGTACCCGCCGCCGGCCTCTATCCGGCCCAGGGGC
CCGATGGCGACGGATACGGCCTGCTGGATGCCTTCCAGTGGCTGGAACGGGAATTCATCGGCGCGGCGCCGGGGCGGAGA
GCGGCCATCGGCGCACACTTTCTGCGGGTGCTGGTCGCGCTGGCCCGGCTGAAGGATGGCGGTGCGCCGGCGGGAGGGCC
GCTGATGCGCCGCGATGCCGATATCGTGGTGCGCTATCGCCGGCTCATCGAGGAGCATTTCCGGCAGGCACAGCCGCTCA
CCTTTTATGCCGACGGGCTCAACATCACCTATGCCCGCCTCAACGCCGCCTGCCGGGCAGTGGCGGGCAAGAGCGCGCTG
AAGCTCATGCACGACCGCCTGATGATCGAAGCCAAGCGCAACCTGCTCTACACGAGCATGAGCGTCGGCGAGGTGGGCCA
CGCCCTTGGCTTTCAGGATCCGGCTTATTTCTCCCGCTTCTTCACCCGCCATGCCGGGCGCTCACCGGCAGCGTTCCGCG
CCGCACCGCGATAG

Upstream 100 bases:

>100_bases
CCCATGGATAGGCCCGCCAAAACGGGCCGACAATGGATGAAAGCAAAATCCTGTTGTACTTTTCGTAAGGCAGCAGCATC
CTCGTGGTCGCGTCACGACA

Downstream 100 bases:

>100_bases
GACGCAGGCGCTCACGCCCGCGCGGCGGCCCGCCCCCGGTAATAGGCGATGGTGGCGGCGATGCCGGTGTCGAGGGACGT
TTCCGGCAAGTCCGGCAACA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: AraC Family Transcriptional Regulator; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator PobR; 4-Hydroxyphenylacetate Catabolism Regulatory Protein HpaA; Transcriptional Regulatory Protein; AraC-Family Transcriptional Regulator; Regulator Of 4HPA-Hydroxylase Operon; Helix-Turn-Helix- Domain Containing Protein AraC Type; PobR Regulator; Transcriptional Regulator Arac Family; Transcriptional Regulator AraC Family Protein; Transcriptional Regulator Pobr Arac Family Protein; AraC Family Regulatory Protein; AraC Family Transcriptional Regulatory Protein; Regulatory Helix-Turn-Helix Protein AraC Family; AraC Family Transcription Regulator; AraC/XylS Family Transcription Factor; AraC-Type Regulatory Protein; AraC-Type Transcription Regulator; Bacterial Regulatory Helix-Turn-Helix Protein; Helix-Turn-Helix AraC Type; Regulator Of 4hpa-Hydroxylase Operon; Transcriptional Regulator Protein; AraC Family Transcription Regulator Protein; Helix-Turn-Helix AraC Domain Protein

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MLHLRMTRQNVIPSFFLYDEALADVDLDFLHVEAIRIRSSVHDWTIRPHAHPEHVQFLFVTEGGGRIRVEDDEWQLDPPT
VVVIPPTAVHEIRFEPGSDGFALTIAASYVTAMAQTDPAFADVPAAGLYPAQGPDGDGYGLLDAFQWLEREFIGAAPGRR
AAIGAHFLRVLVALARLKDGGAPAGGPLMRRDADIVVRYRRLIEEHFRQAQPLTFYADGLNITYARLNAACRAVAGKSAL
KLMHDRLMIEAKRNLLYTSMSVGEVGHALGFQDPAYFSRFFTRHAGRSPAAFRAAPR

Sequences:

>Translated_297_residues
MLHLRMTRQNVIPSFFLYDEALADVDLDFLHVEAIRIRSSVHDWTIRPHAHPEHVQFLFVTEGGGRIRVEDDEWQLDPPT
VVVIPPTAVHEIRFEPGSDGFALTIAASYVTAMAQTDPAFADVPAAGLYPAQGPDGDGYGLLDAFQWLEREFIGAAPGRR
AAIGAHFLRVLVALARLKDGGAPAGGPLMRRDADIVVRYRRLIEEHFRQAQPLTFYADGLNITYARLNAACRAVAGKSAL
KLMHDRLMIEAKRNLLYTSMSVGEVGHALGFQDPAYFSRFFTRHAGRSPAAFRAAPR
>Mature_297_residues
MLHLRMTRQNVIPSFFLYDEALADVDLDFLHVEAIRIRSSVHDWTIRPHAHPEHVQFLFVTEGGGRIRVEDDEWQLDPPT
VVVIPPTAVHEIRFEPGSDGFALTIAASYVTAMAQTDPAFADVPAAGLYPAQGPDGDGYGLLDAFQWLEREFIGAAPGRR
AAIGAHFLRVLVALARLKDGGAPAGGPLMRRDADIVVRYRRLIEEHFRQAQPLTFYADGLNITYARLNAACRAVAGKSAL
KLMHDRLMIEAKRNLLYTSMSVGEVGHALGFQDPAYFSRFFTRHAGRSPAAFRAAPR

Specific function: This Protein Controls The Expression Of At Least Six Genes That Are Involved In The Transport And Catabolism Of L-Arabinose. It Regulates Initiation Of Transcription Of The Arabad Operon And It Also Controls Its Own Synthesis. The L- Arabinose Operon Dis

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32929; Mature: 32929

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLHLRMTRQNVIPSFFLYDEALADVDLDFLHVEAIRIRSSVHDWTIRPHAHPEHVQFLFV
CEEEEECHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEE
TEGGGRIRVEDDEWQLDPPTVVVIPPTAVHEIRFEPGSDGFALTIAASYVTAMAQTDPAF
ECCCCEEEEECCCEECCCCEEEEECCCCEEEEEECCCCCCEEEEEHHHHHHHHHHCCCCH
ADVPAAGLYPAQGPDGDGYGLLDAFQWLEREFIGAAPGRRAAIGAHFLRVLVALARLKDG
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GAPAGGPLMRRDADIVVRYRRLIEEHFRQAQPLTFYADGLNITYARLNAACRAVAGKSAL
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHH
KLMHDRLMIEAKRNLLYTSMSVGEVGHALGFQDPAYFSRFFTRHAGRSPAAFRAAPR
HHHHHHHHHHHHHCEEEEECCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MLHLRMTRQNVIPSFFLYDEALADVDLDFLHVEAIRIRSSVHDWTIRPHAHPEHVQFLFV
CEEEEECHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEECCCCCCCCEEEEEE
TEGGGRIRVEDDEWQLDPPTVVVIPPTAVHEIRFEPGSDGFALTIAASYVTAMAQTDPAF
ECCCCEEEEECCCEECCCCEEEEECCCCEEEEEECCCCCCEEEEEHHHHHHHHHHCCCCH
ADVPAAGLYPAQGPDGDGYGLLDAFQWLEREFIGAAPGRRAAIGAHFLRVLVALARLKDG
HCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
GAPAGGPLMRRDADIVVRYRRLIEEHFRQAQPLTFYADGLNITYARLNAACRAVAGKSAL
CCCCCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEHHHHHHHHHHHHHHHHH
KLMHDRLMIEAKRNLLYTSMSVGEVGHALGFQDPAYFSRFFTRHAGRSPAAFRAAPR
HHHHHHHHHHHHHCEEEEECCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA