Click here to switch to the map view.

The map label for this gene is potC [H]

Identifier: 154246520

GI number: 154246520

Start: 2869970

End: 2870803

Strand: Direct

Name: potC [H]

Synonym: Xaut_2579

Alternate gene names: 154246520

Gene position: 2869970-2870803 (Clockwise)

Preceding gene: 154246519

Following gene: 154246521

Centisome position: 54.06

GC content: 66.19

Gene sequence:

>834_bases
ATGCGCCGCCGTCTGATCCCCGCGCGCGTGGGCGAGCGCATCCTGAAGGTCGCCGGCTGGAGCGTGGTGGCGCTCATCAT
CGCCTTCATCATCCTGCCGGCGGTGGTGGTGGCCATCTCGGCCTTCAACGACCGCGCCATCCTTGCCTTCCCGCCGCAGT
CGTGGTCGCTGCGCTGGTTCCGGCGCGCCTTCACCTATCGCGATTTCGCCGTGGGCTTCCAGAACGGTCTCATCATCACC
GCGTTCGCCTCCTCCATCGCGCTGGTGGTGGGGGCGGGCTTCGCCTTCGCCATCGACCGCTACAGCTTTCGCGGCAAGAG
GACGCTGGAGGCCATGCTGACCTCGCCGCTGGTGATCCCCCATTTCACCATCGGCCTCGGCTTCCTCATCCTCGCCGCGC
AGGTGCATGCCACGCGCACCTTCGCCCTCGTCATCGTGTGCCACGTGGTGCTGGTGCTGCCCTTTGTCATGCGCTCGGTC
TATGTGTCCCTGCGCAATCTCGACGGACGGCTGGAACTGGCCGCCGCGAGCCTCGGTGCCAGGCCCGGCATGGCATTGTG
GACGGTGACGCTGCCGCTCCTCATCCCCGGCCTGTTCTCGGGCTGGCTGTTCGCGGCCATCCTGTCCTTCAACGAATTCA
CCGCCTCGCTGTTCGTCACCGCCCAGGCGACCCAGACCCTGCCGGTGGCCATGTATAATTATGTCCGCGAATATGCCGAC
CCGACGCTCGCGGCGCTCTCCGTCATCTACATCGTGGTGACGGCGGGCCTCCTCACCCTCGCCAACCAGTTTCTCGGCCT
CGGAAAGGTGCTGAACGTTGAGCATGCCCGCTGA

Upstream 100 bases:

>100_bases
TCGCGGCGGCGCTGTCCATCACCGGCATCGCGCTCACCTTCGCGGTGCTGGCCATGGCGAAGCAGGCCATCCGCCCGCTG
GAAAAGATCGGAGCCCACTG

Downstream 100 bases:

>100_bases
ACGCCGCGATCCGCAGGAGCGCGCCTTTATGTCCTCAATTCCGCCTGACGCGGCGTCCCGGACCCGCCCGGTGGGCGTCC
AGATCGACGGTGTCACCAAG

Product: binding-protein-dependent transport systems inner membrane component

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MRRRLIPARVGERILKVAGWSVVALIIAFIILPAVVVAISAFNDRAILAFPPQSWSLRWFRRAFTYRDFAVGFQNGLIIT
AFASSIALVVGAGFAFAIDRYSFRGKRTLEAMLTSPLVIPHFTIGLGFLILAAQVHATRTFALVIVCHVVLVLPFVMRSV
YVSLRNLDGRLELAAASLGARPGMALWTVTLPLLIPGLFSGWLFAAILSFNEFTASLFVTAQATQTLPVAMYNYVREYAD
PTLAALSVIYIVVTAGLLTLANQFLGLGKVLNVEHAR

Sequences:

>Translated_277_residues
MRRRLIPARVGERILKVAGWSVVALIIAFIILPAVVVAISAFNDRAILAFPPQSWSLRWFRRAFTYRDFAVGFQNGLIIT
AFASSIALVVGAGFAFAIDRYSFRGKRTLEAMLTSPLVIPHFTIGLGFLILAAQVHATRTFALVIVCHVVLVLPFVMRSV
YVSLRNLDGRLELAAASLGARPGMALWTVTLPLLIPGLFSGWLFAAILSFNEFTASLFVTAQATQTLPVAMYNYVREYAD
PTLAALSVIYIVVTAGLLTLANQFLGLGKVLNVEHAR
>Mature_277_residues
MRRRLIPARVGERILKVAGWSVVALIIAFIILPAVVVAISAFNDRAILAFPPQSWSLRWFRRAFTYRDFAVGFQNGLIIT
AFASSIALVVGAGFAFAIDRYSFRGKRTLEAMLTSPLVIPHFTIGLGFLILAAQVHATRTFALVIVCHVVLVLPFVMRSV
YVSLRNLDGRLELAAASLGARPGMALWTVTLPLLIPGLFSGWLFAAILSFNEFTASLFVTAQATQTLPVAMYNYVREYAD
PTLAALSVIYIVVTAGLLTLANQFLGLGKVLNVEHAR

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=217, Percent_Identity=28.110599078341, Blast_Score=98, Evalue=5e-22,
Organism=Escherichia coli, GI1787081, Length=241, Percent_Identity=30.2904564315353, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1787714, Length=242, Percent_Identity=30.9917355371901, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30298; Mature: 30298

Theoretical pI: Translated: 11.29; Mature: 11.29

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRRLIPARVGERILKVAGWSVVALIIAFIILPAVVVAISAFNDRAILAFPPQSWSLRWF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
RRAFTYRDFAVGFQNGLIITAFASSIALVVGAGFAFAIDRYSFRGKRTLEAMLTSPLVIP
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHH
HFTIGLGFLILAAQVHATRTFALVIVCHVVLVLPFVMRSVYVSLRNLDGRLELAAASLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
RPGMALWTVTLPLLIPGLFSGWLFAAILSFNEFTASLFVTAQATQTLPVAMYNYVREYAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCC
PTLAALSVIYIVVTAGLLTLANQFLGLGKVLNVEHAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC
>Mature Secondary Structure
MRRRLIPARVGERILKVAGWSVVALIIAFIILPAVVVAISAFNDRAILAFPPQSWSLRWF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
RRAFTYRDFAVGFQNGLIITAFASSIALVVGAGFAFAIDRYSFRGKRTLEAMLTSPLVIP
HHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHCCCHHH
HFTIGLGFLILAAQVHATRTFALVIVCHVVLVLPFVMRSVYVSLRNLDGRLELAAASLGA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCC
RPGMALWTVTLPLLIPGLFSGWLFAAILSFNEFTASLFVTAQATQTLPVAMYNYVREYAD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHCC
PTLAALSVIYIVVTAGLLTLANQFLGLGKVLNVEHAR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]