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The map label for this gene is ycdK [C]

Identifier: 154246517

GI number: 154246517

Start: 2867077

End: 2867496

Strand: Direct

Name: ycdK [C]

Synonym: Xaut_2576

Alternate gene names: 154246517

Gene position: 2867077-2867496 (Clockwise)

Preceding gene: 154246516

Following gene: 154246518

Centisome position: 54.0

GC content: 65.0

Gene sequence:

>420_bases
GTGCCCACCCACACCCGCATCCGCCCGTTCAATACCAAGCAGGCCTATCCCGAGCAGAAGCTCGACAATGACGTATGCAT
GGCCGTGCGCGCCGGCAGCACGGTCTATTTGCGCGGCCAGACCGCGATGGATCTTGACGGCAACATCATCGGCGTGGGCG
ATGCCGCGGCCCAGGCCGAGAACGCCATGGCCTGCGCCAAGGTGTTGCTGGAAGAGGCCGGCGCGCAGCTCGAGGACGTG
GTGAAGATCGTCATCTACATCACCGACCGGGCCTATCGCGAACCGGTCTACCGCGTGGTGGGCGCCTGGCTGAAGGGGGT
CTATCCGGTCTCCACCGGCCTCATCGTGCAGGGCCTCGCCAAGCCGGAATATCTGATGGAGATCGACATCATCGCCGAGA
TCACCGCCGAGCGGGCGTGA

Upstream 100 bases:

>100_bases
GGTGAGGTGACCGCGGTCCACGGCATCGAGGCCGAAGCCGAGCCGCTGCTCTATGCCAACCGCGCCTACCGGCGCCTCTC
CGCTGCATAAGGGTTTGATC

Downstream 100 bases:

>100_bases
CGGCGCAGGGGTACCGGCCACGCGCGCGGCCCGTCGTGGCGGCGCGCTGCGGCATGTGGATGACGCGCTCCGAATGACGT
CATCCCCCGGCTTGGCGGAG

Product: endoribonuclease L-PSP

Products: NA

Alternate protein names: Endoribonuclease L-PSP Family Protein; Endoribonuclease; Endoribonuclease L-PSP Superfamily Protein; Pyrimidine Utilization Protein C; Ribonuclease PSP-Type; L-PSP Family Endoribonuclease

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MPTHTRIRPFNTKQAYPEQKLDNDVCMAVRAGSTVYLRGQTAMDLDGNIIGVGDAAAQAENAMACAKVLLEEAGAQLEDV
VKIVIYITDRAYREPVYRVVGAWLKGVYPVSTGLIVQGLAKPEYLMEIDIIAEITAERA

Sequences:

>Translated_139_residues
MPTHTRIRPFNTKQAYPEQKLDNDVCMAVRAGSTVYLRGQTAMDLDGNIIGVGDAAAQAENAMACAKVLLEEAGAQLEDV
VKIVIYITDRAYREPVYRVVGAWLKGVYPVSTGLIVQGLAKPEYLMEIDIIAEITAERA
>Mature_138_residues
PTHTRIRPFNTKQAYPEQKLDNDVCMAVRAGSTVYLRGQTAMDLDGNIIGVGDAAAQAENAMACAKVLLEEAGAQLEDVV
KIVIYITDRAYREPVYRVVGAWLKGVYPVSTGLIVQGLAKPEYLMEIDIIAEITAERA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15200; Mature: 15069

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTHTRIRPFNTKQAYPEQKLDNDVCMAVRAGSTVYLRGQTAMDLDGNIIGVGDAAAQAE
CCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCEEECCCCCEEECCCHHHHHH
NAMACAKVLLEEAGAQLEDVVKIVIYITDRAYREPVYRVVGAWLKGVYPVSTGLIVQGLA
HHHHHHHHHHHHCCCCHHHHHEEHHEECCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCC
KPEYLMEIDIIAEITAERA
CCCHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PTHTRIRPFNTKQAYPEQKLDNDVCMAVRAGSTVYLRGQTAMDLDGNIIGVGDAAAQAE
CCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEEEEECCEEECCCCCEEECCCHHHHHH
NAMACAKVLLEEAGAQLEDVVKIVIYITDRAYREPVYRVVGAWLKGVYPVSTGLIVQGLA
HHHHHHHHHHHHCCCCHHHHHEEHHEECCCHHHHHHHHHHHHHHCCCCCCCCCCEECCCC
KPEYLMEIDIIAEITAERA
CCCHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA