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The map label for this gene is petR [H]

Identifier: 154246499

GI number: 154246499

Start: 2851592

End: 2852311

Strand: Direct

Name: petR [H]

Synonym: Xaut_2558

Alternate gene names: 154246499

Gene position: 2851592-2852311 (Clockwise)

Preceding gene: 154246498

Following gene: 154246500

Centisome position: 53.71

GC content: 70.83

Gene sequence:

>720_bases
ATGTCTGATGCCGCTGCTGCGCCCGCCCCCATGCCCCTCGCCGACGACGCGCCGCATCTTCTTGTGGTGGACGACGACAA
CCGGATCCGCACCTTGCTGTCGCGCTTCCTCACCGAGCACGGCTACCGGGTGACCACCGCCGCCAATGCCGCCGAGGCGC
GCGGGCGGCTGGACGGGCTCGCCTTCGACCTTTTGGTGCTCGACGTGATGATGCCGGGGGAGAGCGGGCTCGATCTTGCC
CGCGACCTGCGGCGCTCGTCCGCCGTGCCGATCCTGATGCTCACCGCCCGCTCGGAGACCTCCGACCGCATCACCGGGCT
GGAAGCGGGCGTGGACGATTATCTCGCCAAGCCTTTCGAGCCGCGCGAGCTGCTGCTGCGCATCGGCTCCATCCTGAAGC
GGGCGCTGCCGCCGGCGCAGAAGGCCATCGAGAGCGTGCGCTTCGGCGAGTTCGCCTTCCACCTGGAGCGGGGCGAACTG
ACCCGCAACACCGAGATCGTGCGCATTACCGAGCGCGAGCGCGACATGCTGCGCGCGCTCGCGGAAGCGCCGGGCGAGAC
CGTGCCGCGCCTGGCGCTCGCCGGCGGCGGGGCGGCGAGCGAGCGAGCGGTGGACGTGCAGGTGAACCGCCTGCGCCGCA
AGCTGGAGCGGGACCCGGCCAATCCGGTTTTCCTGCAGACGGTGCGTGGCATCGGCTATCGCCTGGTGGTGACGCCTTGA

Upstream 100 bases:

>100_bases
GCCGGCGTGACGGCGCGCCGGGTGGTTCGGCCGGATGCCCGAGCGGAGAACCCTGCCGACACCGTGACCGTGATCTGGAT
TGTGACCTGCGAGCGCCCCC

Downstream 100 bases:

>100_bases
GCGTGGCCGAAAGCGGGCCGTCGGGACTGCGCCTGCTCGGCGGCTGGCTGAGGGACGCCAACACGCGCTTTGCCGCCTGG
TTCAACCGGGTGACACCAAA

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MSDAAAAPAPMPLADDAPHLLVVDDDNRIRTLLSRFLTEHGYRVTTAANAAEARGRLDGLAFDLLVLDVMMPGESGLDLA
RDLRRSSAVPILMLTARSETSDRITGLEAGVDDYLAKPFEPRELLLRIGSILKRALPPAQKAIESVRFGEFAFHLERGEL
TRNTEIVRITERERDMLRALAEAPGETVPRLALAGGGAASERAVDVQVNRLRRKLERDPANPVFLQTVRGIGYRLVVTP

Sequences:

>Translated_239_residues
MSDAAAAPAPMPLADDAPHLLVVDDDNRIRTLLSRFLTEHGYRVTTAANAAEARGRLDGLAFDLLVLDVMMPGESGLDLA
RDLRRSSAVPILMLTARSETSDRITGLEAGVDDYLAKPFEPRELLLRIGSILKRALPPAQKAIESVRFGEFAFHLERGEL
TRNTEIVRITERERDMLRALAEAPGETVPRLALAGGGAASERAVDVQVNRLRRKLERDPANPVFLQTVRGIGYRLVVTP
>Mature_238_residues
SDAAAAPAPMPLADDAPHLLVVDDDNRIRTLLSRFLTEHGYRVTTAANAAEARGRLDGLAFDLLVLDVMMPGESGLDLAR
DLRRSSAVPILMLTARSETSDRITGLEAGVDDYLAKPFEPRELLLRIGSILKRALPPAQKAIESVRFGEFAFHLERGELT
RNTEIVRITERERDMLRALAEAPGETVPRLALAGGGAASERAVDVQVNRLRRKLERDPANPVFLQTVRGIGYRLVVTP

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=47.5770925110132, Blast_Score=184, Evalue=6e-48,
Organism=Escherichia coli, GI1788394, Length=232, Percent_Identity=32.3275862068966, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787229, Length=229, Percent_Identity=36.6812227074236, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=32.034632034632, Blast_Score=127, Evalue=6e-31,
Organism=Escherichia coli, GI1786784, Length=225, Percent_Identity=36, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1786599, Length=224, Percent_Identity=33.0357142857143, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=35.9649122807018, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI87082012, Length=230, Percent_Identity=31.304347826087, Blast_Score=109, Evalue=2e-25,
Organism=Escherichia coli, GI1786911, Length=227, Percent_Identity=36.5638766519824, Blast_Score=108, Evalue=4e-25,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=31.8181818181818, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=31.0810810810811, Blast_Score=99, Evalue=3e-22,
Organism=Escherichia coli, GI1790552, Length=223, Percent_Identity=30.9417040358744, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=28.755364806867, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1789402, Length=222, Percent_Identity=29.2792792792793, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790299, Length=123, Percent_Identity=34.1463414634146, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788191, Length=126, Percent_Identity=30.1587301587302, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1788550, Length=118, Percent_Identity=29.6610169491525, Blast_Score=61, Evalue=6e-11,
Organism=Escherichia coli, GI1788713, Length=116, Percent_Identity=36.2068965517241, Blast_Score=61, Evalue=8e-11,
Organism=Saccharomyces cerevisiae, GI6322000, Length=127, Percent_Identity=31.496062992126, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26210; Mature: 26079

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDAAAAPAPMPLADDAPHLLVVDDDNRIRTLLSRFLTEHGYRVTTAANAAEARGRLDGL
CCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHH
AFDLLVLDVMMPGESGLDLARDLRRSSAVPILMLTARSETSDRITGLEAGVDDYLAKPFE
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCHHHHHCCCCC
PRELLLRIGSILKRALPPAQKAIESVRFGEFAFHLERGELTRNTEIVRITERERDMLRAL
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHEEEEECCCCCCCCEEEEECHHHHHHHHHH
AEAPGETVPRLALAGGGAASERAVDVQVNRLRRKLERDPANPVFLQTVRGIGYRLVVTP
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECC
>Mature Secondary Structure 
SDAAAAPAPMPLADDAPHLLVVDDDNRIRTLLSRFLTEHGYRVTTAANAAEARGRLDGL
CCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHH
AFDLLVLDVMMPGESGLDLARDLRRSSAVPILMLTARSETSDRITGLEAGVDDYLAKPFE
HHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCHHHHHCCCCC
PRELLLRIGSILKRALPPAQKAIESVRFGEFAFHLERGELTRNTEIVRITERERDMLRAL
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHEEEEECCCCCCCCEEEEECHHHHHHHHHH
AEAPGETVPRLALAGGGAASERAVDVQVNRLRRKLERDPANPVFLQTVRGIGYRLVVTP
HHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]