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The map label for this gene is rbcL

Identifier: 154245862

GI number: 154245862

Start: 2169093

End: 2170559

Strand: Reverse

Name: rbcL

Synonym: Xaut_1918

Alternate gene names: 154245862

Gene position: 2170559-2169093 (Counterclockwise)

Preceding gene: 154245864

Following gene: 154245861

Centisome position: 40.89

GC content: 66.53

Gene sequence:

>1467_bases
ATGGGTGCCGACGCCGCCATCGGGCAGATCAAGGACGCCAAGAAGAGGTACGCCGCCGGCGTACTCAAATATGCCCAGAT
GGGCTATTGGGACGGCGACTACCAGCCGAAGGACACCGATGTCCTGGCCCTGTTCCGCATCACGCCGCAGGACGGCGTGG
ACGCGGTGGAAGCCGCTGCGGCGGTGGCGGGCGAAAGCTCCACCGCCACCTGGACCGTGGTGTGGACCGACCGCCTCACC
GCCGCCGACATGTACCGCGCCAAGGCCTACAAGGTGGAGCCGGTGCCGGGCCAGCCGGGCCAGTATTTCTGCTGGGTCGC
CTACGACCTCGACCTGTTCGAGGAAGGCTCCATCGCCAACCTGACCGCGTCGATCATCGGCAACGTCTTCTCGTTCAAGC
CGCTCAAGGCCTGCCGCCTGGAGGACATGCGCCTGCCGGTGGCCTATGTGAAGACCTTCCGCGGCCCGCCTACCGGCATC
GTGGTGGAGCGCGAGCGCCTCGACAAGTTCGGCCGGCCGCTGCTCGGCGCCACTACCAAGCCCAAGCTCGGCCTCTCCGG
CAAGAACTACGGCCGCGTGGTCTATGAGGGGCTCAAGGGCGGCCTCGACTTCGTGAAGGACGACGAGAACATCAACTCGC
AGCCCTTCATGCACTGGCGCGACCGCTTCCTCTACTGCATGGAGGCCGTCAACAAGGCCCAGGCCGAGACCGGCGAGGTG
AAGGGGCACTACCTCAACATCACCGCCGGCACCATGGAAGAGATGTACCGCCGCGCCGAGTTCGCCAAGGAGCTGGGCTC
CGTGGTGGTGATGGTGGATCTCATCGTGGGCTGGACCGCGATCCAGTCCATCTCCAACTGGTGCCGCGAGAACGACGTGC
TGCTGCACATGCACCGCGCCGGCCATGGCACCTACACGCGCCAGAAGGGCCACGGCATCTCGTTCCGCGTCATCGCCAAG
TGGCTGCGCCTCGCCGGCGTCGACCATCTCCACACAGGCACCGCGGTGGGCAAGCTGGAAGGCGACCCCATGACCGTGCA
GGGCTACTACAACGTCTGCCGCGAGACCGTGACCAAGACCGACTACACCCGCGGCATCTTCTTCGACCAGGACTGGGCCG
GCCTGCGCAAGGTGATGCCGGTGGCCTCCGGTGGCATCCATGCCGGCCAGATGCACCAGCTCATCGACCTGTTCGGCGAG
GACGTGGTGCTGCAGTTCGGCGGCGGCACCATCGGCCATCCCGATGGCATCCAGGCCGGCGCCATCGCCAACCGCGTCGC
GCTGGAAACCATGATCCTCGCCCGCAACGAGGGCCGGGACATCAAGAACGAGGGTCCCGAAATCCTCATCGAGGCCGCCA
AGTGGTGCCGTCCGCTGCGCGCCGCCCTCGATACCTGGGGCGAGGTGACCTTCAACTACGCCTCCACCGACACTTCCGAC
TTCGTTCCCACCGCGTCCGTGGCCTGA

Upstream 100 bases:

>100_bases
GCCATTTCAGATTTCCTGAATGCTTAGTTCATATCATTCAAATTTACCTAAATCTGGTCATGGGGCAAGGTCCCTCCAAC
AAGCAAGGAGGGCCGCCATC

Downstream 100 bases:

>100_bases
GGAGAGGAACCATGCGCATCACCCAAGGCACCTTCTCCTTCCTGCCGGATCTCACCCCGGCCCAGGTCCGCGCCCAGGTG
CAGTATTGCCTGGACCAGGG

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit [H]

Number of amino acids: Translated: 488; Mature: 487

Protein sequence:

>488_residues
MGADAAIGQIKDAKKRYAAGVLKYAQMGYWDGDYQPKDTDVLALFRITPQDGVDAVEAAAAVAGESSTATWTVVWTDRLT
AADMYRAKAYKVEPVPGQPGQYFCWVAYDLDLFEEGSIANLTASIIGNVFSFKPLKACRLEDMRLPVAYVKTFRGPPTGI
VVERERLDKFGRPLLGATTKPKLGLSGKNYGRVVYEGLKGGLDFVKDDENINSQPFMHWRDRFLYCMEAVNKAQAETGEV
KGHYLNITAGTMEEMYRRAEFAKELGSVVVMVDLIVGWTAIQSISNWCRENDVLLHMHRAGHGTYTRQKGHGISFRVIAK
WLRLAGVDHLHTGTAVGKLEGDPMTVQGYYNVCRETVTKTDYTRGIFFDQDWAGLRKVMPVASGGIHAGQMHQLIDLFGE
DVVLQFGGGTIGHPDGIQAGAIANRVALETMILARNEGRDIKNEGPEILIEAAKWCRPLRAALDTWGEVTFNYASTDTSD
FVPTASVA

Sequences:

>Translated_488_residues
MGADAAIGQIKDAKKRYAAGVLKYAQMGYWDGDYQPKDTDVLALFRITPQDGVDAVEAAAAVAGESSTATWTVVWTDRLT
AADMYRAKAYKVEPVPGQPGQYFCWVAYDLDLFEEGSIANLTASIIGNVFSFKPLKACRLEDMRLPVAYVKTFRGPPTGI
VVERERLDKFGRPLLGATTKPKLGLSGKNYGRVVYEGLKGGLDFVKDDENINSQPFMHWRDRFLYCMEAVNKAQAETGEV
KGHYLNITAGTMEEMYRRAEFAKELGSVVVMVDLIVGWTAIQSISNWCRENDVLLHMHRAGHGTYTRQKGHGISFRVIAK
WLRLAGVDHLHTGTAVGKLEGDPMTVQGYYNVCRETVTKTDYTRGIFFDQDWAGLRKVMPVASGGIHAGQMHQLIDLFGE
DVVLQFGGGTIGHPDGIQAGAIANRVALETMILARNEGRDIKNEGPEILIEAAKWCRPLRAALDTWGEVTFNYASTDTSD
FVPTASVA
>Mature_487_residues
GADAAIGQIKDAKKRYAAGVLKYAQMGYWDGDYQPKDTDVLALFRITPQDGVDAVEAAAAVAGESSTATWTVVWTDRLTA
ADMYRAKAYKVEPVPGQPGQYFCWVAYDLDLFEEGSIANLTASIIGNVFSFKPLKACRLEDMRLPVAYVKTFRGPPTGIV
VERERLDKFGRPLLGATTKPKLGLSGKNYGRVVYEGLKGGLDFVKDDENINSQPFMHWRDRFLYCMEAVNKAQAETGEVK
GHYLNITAGTMEEMYRRAEFAKELGSVVVMVDLIVGWTAIQSISNWCRENDVLLHMHRAGHGTYTRQKGHGISFRVIAKW
LRLAGVDHLHTGTAVGKLEGDPMTVQGYYNVCRETVTKTDYTRGIFFDQDWAGLRKVMPVASGGIHAGQMHQLIDLFGED
VVLQFGGGTIGHPDGIQAGAIANRVALETMILARNEGRDIKNEGPEILIEAAKWCRPLRAALDTWGEVTFNYASTDTSDF
VPTASVA

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 53825; Mature: 53694

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGADAAIGQIKDAKKRYAAGVLKYAQMGYWDGDYQPKDTDVLALFRITPQDGVDAVEAAA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
AVAGESSTATWTVVWTDRLTAADMYRAKAYKVEPVPGQPGQYFCWVAYDLDLFEEGSIAN
HHCCCCCCEEEEEEEECCCCHHHHHHHHCEEECCCCCCCCCEEEEEEEECCCCCCCCHHH
LTASIIGNVFSFKPLKACRLEDMRLPVAYVKTFRGPPTGIVVERERLDKFGRPLLGATTK
HHHHHHHHHHCCCCHHHHCHHHCCCCHHHHHHCCCCCCCEEEEHHHHHHHCCCCCCCCCC
PKLGLSGKNYGRVVYEGLKGGLDFVKDDENINSQPFMHWRDRFLYCMEAVNKAQAETGEV
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
KGHYLNITAGTMEEMYRRAEFAKELGSVVVMVDLIVGWTAIQSISNWCRENDVLLHMHRA
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
GHGTYTRQKGHGISFRVIAKWLRLAGVDHLHTGTAVGKLEGDPMTVQGYYNVCRETVTKT
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHCC
DYTRGIFFDQDWAGLRKVMPVASGGIHAGQMHQLIDLFGEDVVLQFGGGTIGHPDGIQAG
CCCCCEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHH
AIANRVALETMILARNEGRDIKNEGPEILIEAAKWCRPLRAALDTWGEVTFNYASTDTSD
HHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
FVPTASVA
CCCCCCCC
>Mature Secondary Structure 
GADAAIGQIKDAKKRYAAGVLKYAQMGYWDGDYQPKDTDVLALFRITPQDGVDAVEAAA
CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHH
AVAGESSTATWTVVWTDRLTAADMYRAKAYKVEPVPGQPGQYFCWVAYDLDLFEEGSIAN
HHCCCCCCEEEEEEEECCCCHHHHHHHHCEEECCCCCCCCCEEEEEEEECCCCCCCCHHH
LTASIIGNVFSFKPLKACRLEDMRLPVAYVKTFRGPPTGIVVERERLDKFGRPLLGATTK
HHHHHHHHHHCCCCHHHHCHHHCCCCHHHHHHCCCCCCCEEEEHHHHHHHCCCCCCCCCC
PKLGLSGKNYGRVVYEGLKGGLDFVKDDENINSQPFMHWRDRFLYCMEAVNKAQAETGEV
CCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
KGHYLNITAGTMEEMYRRAEFAKELGSVVVMVDLIVGWTAIQSISNWCRENDVLLHMHRA
CCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC
GHGTYTRQKGHGISFRVIAKWLRLAGVDHLHTGTAVGKLEGDPMTVQGYYNVCRETVTKT
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHCC
DYTRGIFFDQDWAGLRKVMPVASGGIHAGQMHQLIDLFGEDVVLQFGGGTIGHPDGIQAG
CCCCCEEECCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHH
AIANRVALETMILARNEGRDIKNEGPEILIEAAKWCRPLRAALDTWGEVTFNYASTDTSD
HHHHHHHHHHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
FVPTASVA
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1900916; 9882445 [H]