Click here to switch to the map view.

The map label for this gene is cbbS [H]

Identifier: 154245861

GI number: 154245861

Start: 2168680

End: 2169081

Strand: Reverse

Name: cbbS [H]

Synonym: Xaut_1917

Alternate gene names: 154245861

Gene position: 2169081-2168680 (Counterclockwise)

Preceding gene: 154245862

Following gene: 154245860

Centisome position: 40.86

GC content: 69.15

Gene sequence:

>402_bases
ATGCGCATCACCCAAGGCACCTTCTCCTTCCTGCCGGATCTCACCCCGGCCCAGGTCCGCGCCCAGGTGCAGTATTGCCT
GGACCAGGGCTGGGCGGTCTCGGTGGAACACACCGACGACCCGCACCCGCGCAACACCTATTGGGAAATGTGGGGCCCGC
CCATGTTCGACCTGCGCGACGCCGCCGGCGTCGTCGGCGAGATCGACGGCTGCCGCAACGCCTTCCCCACGCGCTATGTG
CGGGTCAACGCCTTCGACTCCACCCGCGGGTGGGAGACCGTGCGCCTGTCCTTCATCGTCCAGCGCCCGCCGGTGGAAGA
CGGCTTCCGCCTGGAACGCACCGAAGGCCCCGGCCGCAGCCAGCGCTACTCCATGCAGCACCGGCAGTATTCCGCCGGCT
GA

Upstream 100 bases:

>100_bases
GCGCCGCCCTCGATACCTGGGGCGAGGTGACCTTCAACTACGCCTCCACCGACACTTCCGACTTCGTTCCCACCGCGTCC
GTGGCCTGAGGAGAGGAACC

Downstream 100 bases:

>100_bases
CCGGACCGACTGACACCTTATCGCTTCACCAGCGCGGCCGTTCCCACCGCGCAACTTAAGCCGAGGTTCGAGCGATGCTC
AACACAGCCTTTTCCGCACC

Product: ribulose-bisphosphate carboxylase

Products: NA

Alternate protein names: RuBisCO small subunit [H]

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MRITQGTFSFLPDLTPAQVRAQVQYCLDQGWAVSVEHTDDPHPRNTYWEMWGPPMFDLRDAAGVVGEIDGCRNAFPTRYV
RVNAFDSTRGWETVRLSFIVQRPPVEDGFRLERTEGPGRSQRYSMQHRQYSAG

Sequences:

>Translated_133_residues
MRITQGTFSFLPDLTPAQVRAQVQYCLDQGWAVSVEHTDDPHPRNTYWEMWGPPMFDLRDAAGVVGEIDGCRNAFPTRYV
RVNAFDSTRGWETVRLSFIVQRPPVEDGFRLERTEGPGRSQRYSMQHRQYSAG
>Mature_133_residues
MRITQGTFSFLPDLTPAQVRAQVQYCLDQGWAVSVEHTDDPHPRNTYWEMWGPPMFDLRDAAGVVGEIDGCRNAFPTRYV
RVNAFDSTRGWETVRLSFIVQRPPVEDGFRLERTEGPGRSQRYSMQHRQYSAG

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG4451

COG function: function code C; Ribulose bisphosphate carboxylase small subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO small chain family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000894 [H]

Pfam domain/function: PF00101 RuBisCO_small [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 15325; Mature: 15325

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRITQGTFSFLPDLTPAQVRAQVQYCLDQGWAVSVEHTDDPHPRNTYWEMWGPPMFDLRD
CCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCC
AAGVVGEIDGCRNAFPTRYVRVNAFDSTRGWETVRLSFIVQRPPVEDGFRLERTEGPGRS
CCCCEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCC
QRYSMQHRQYSAG
CHHHHHHHCCCCC
>Mature Secondary Structure
MRITQGTFSFLPDLTPAQVRAQVQYCLDQGWAVSVEHTDDPHPRNTYWEMWGPPMFDLRD
CCCCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCCCCCCCCCC
AAGVVGEIDGCRNAFPTRYVRVNAFDSTRGWETVRLSFIVQRPPVEDGFRLERTEGPGRS
CCCCEECCCCCCCCCCCEEEEEEECCCCCCCEEEEEEEEEECCCCCCCEEEEECCCCCCC
QRYSMQHRQYSAG
CHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1900916 [H]