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The map label for this gene is glcF [H]

Identifier: 154245812

GI number: 154245812

Start: 2104416

End: 2105735

Strand: Reverse

Name: glcF [H]

Synonym: Xaut_1868

Alternate gene names: 154245812

Gene position: 2105735-2104416 (Counterclockwise)

Preceding gene: 154245813

Following gene: 154245811

Centisome position: 39.66

GC content: 69.92

Gene sequence:

>1320_bases
ATGCAGACCCATTTCTCCCTCGCCCAGCTCGCCGATCCCCACGTGGCGGAGGCGGAAAAGATCCTGCGCACCTGCGTGCA
TTGCGGGTTCTGCACCGCCACCTGCCCCACCTATGTGCTGCTCGGCGACGAGCTGGATTCCCCGCGCGGGCGCATCTATC
TCATCAAGGATATGCTGGAGAACGACCGGCCTGCGACCGAGCAGGAGGTCAAGCATATCGACCGCTGCCTCTCCTGCCTG
TCCTGCATGACCACCTGCCCCTCGGGCGTGAACTACATGCACTTGGTGGATCAGGCCCGCGTCCACATCGAGAAGACCTA
TGTGCGGCCGCCCCAGGACCGGCTCATGCGGGCCATGCTCGCCAAGGTGCTGCCCTATCCGGACCGCTTCCGCCTCGCCC
TCATGGGCGCCATGGTGGGCAAGCCGTTCGCACCTCTGCTGGCGAAGATCCCCGGGCTGAAGCCGCTGGCCGCCATGCTC
CGGCTGTCGCCCGGCATGCCCAATGGCCGCGCCCACCACGAGGCGCCCGGCACCTTCCCGGCCCAGGGCACGCGGCGGGC
GCGGGTGGCCCTGCTGCGCGGCTGCGCCCAGCCGGTGCTGCGCCCTTCCATCGACGACGCCGCCATCCGCCTGCTCACCC
GCCTCGGGGTGGAGGTGGTGCGGGTGGAGGGCGAGGGCTGCTGCGGCGCCCTGGTCCACCACATGGGGCGGGAGGAGGAG
GCCCACGCCTTCGCCCGCAACAATGTGGATGCCTGGACCCGCGAGATGGACGGGCCGGGCCTCGACGCCATCCTCGTCAC
CACTTCGGGCTGCGGCACGCCCATCAAGGATTACGGCCACATGCTGCGCCTTGATGCCGCCTACAAGGACAAGGCGGCGC
GGGTCTCGGCCATCACCCGCGACATCAGCGAATTCCTGGTGACACTCGACCTGCCCAAGGCCGACGCGCCGCTGGGCCGG
CGGGTGGCCTATCACTCGGCCTGCTCGCTCCAGCACGGGCAGAAGGTGAAGGGGCCGCCGGTGGAGCTGCTGCGCGCCGT
GGGCTTCGAGGTGGCCGAGCCGTTCGACCCGCATCTGTGCTGCGGCTCGGCGGGCACCTACAACATGCTCCAGAGCGAGA
TCGCCGACCAGCTCAAGGCGAAGAAGGTGGGGACGCTGGAGGCGCTCTCGCCCGACATCATCGCCGCCGGCAACATCGGC
TGCATGGCACAGATCGGCTCCGGCACCGACGTGCCGGTGGCGCACACGGTGGAACTGCTGGACTGGGCCACGGGCGGCCC
GGCGCCGGCGGGGATTTCCGGAACCGCGAAGGCGGCGTGA

Upstream 100 bases:

>100_bases
CCCGGCCGCATGCATGCGGGGATGTGAGATGGCAAGCCGTCCGCGTCCTTTCCGTCGACATCCTTCCCGCCCCCTGCCTC
CTTTTCACGGCTGAGCGCCC

Downstream 100 bases:

>100_bases
GACTGCCCCGTAAGACTGCAGCGTGAGGGGGTCACCATCGATCCCCCACCGCTGGCATGATTTTCCCCTCCCCCGCAGGA
CCAAAGATGCCCAAGCCCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MQTHFSLAQLADPHVAEAEKILRTCVHCGFCTATCPTYVLLGDELDSPRGRIYLIKDMLENDRPATEQEVKHIDRCLSCL
SCMTTCPSGVNYMHLVDQARVHIEKTYVRPPQDRLMRAMLAKVLPYPDRFRLALMGAMVGKPFAPLLAKIPGLKPLAAML
RLSPGMPNGRAHHEAPGTFPAQGTRRARVALLRGCAQPVLRPSIDDAAIRLLTRLGVEVVRVEGEGCCGALVHHMGREEE
AHAFARNNVDAWTREMDGPGLDAILVTTSGCGTPIKDYGHMLRLDAAYKDKAARVSAITRDISEFLVTLDLPKADAPLGR
RVAYHSACSLQHGQKVKGPPVELLRAVGFEVAEPFDPHLCCGSAGTYNMLQSEIADQLKAKKVGTLEALSPDIIAAGNIG
CMAQIGSGTDVPVAHTVELLDWATGGPAPAGISGTAKAA

Sequences:

>Translated_439_residues
MQTHFSLAQLADPHVAEAEKILRTCVHCGFCTATCPTYVLLGDELDSPRGRIYLIKDMLENDRPATEQEVKHIDRCLSCL
SCMTTCPSGVNYMHLVDQARVHIEKTYVRPPQDRLMRAMLAKVLPYPDRFRLALMGAMVGKPFAPLLAKIPGLKPLAAML
RLSPGMPNGRAHHEAPGTFPAQGTRRARVALLRGCAQPVLRPSIDDAAIRLLTRLGVEVVRVEGEGCCGALVHHMGREEE
AHAFARNNVDAWTREMDGPGLDAILVTTSGCGTPIKDYGHMLRLDAAYKDKAARVSAITRDISEFLVTLDLPKADAPLGR
RVAYHSACSLQHGQKVKGPPVELLRAVGFEVAEPFDPHLCCGSAGTYNMLQSEIADQLKAKKVGTLEALSPDIIAAGNIG
CMAQIGSGTDVPVAHTVELLDWATGGPAPAGISGTAKAA
>Mature_439_residues
MQTHFSLAQLADPHVAEAEKILRTCVHCGFCTATCPTYVLLGDELDSPRGRIYLIKDMLENDRPATEQEVKHIDRCLSCL
SCMTTCPSGVNYMHLVDQARVHIEKTYVRPPQDRLMRAMLAKVLPYPDRFRLALMGAMVGKPFAPLLAKIPGLKPLAAML
RLSPGMPNGRAHHEAPGTFPAQGTRRARVALLRGCAQPVLRPSIDDAAIRLLTRLGVEVVRVEGEGCCGALVHHMGREEE
AHAFARNNVDAWTREMDGPGLDAILVTTSGCGTPIKDYGHMLRLDAAYKDKAARVSAITRDISEFLVTLDLPKADAPLGR
RVAYHSACSLQHGQKVKGPPVELLRAVGFEVAEPFDPHLCCGSAGTYNMLQSEIADQLKAKKVGTLEALSPDIIAAGNIG
CMAQIGSGTDVPVAHTVELLDWATGGPAPAGISGTAKAA

Specific function: Unknown

COG id: COG0247

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI48994913, Length=425, Percent_Identity=42.3529411764706, Blast_Score=331, Evalue=5e-92,
Organism=Escherichia coli, GI1786497, Length=240, Percent_Identity=28.3333333333333, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1788576, Length=423, Percent_Identity=26.241134751773, Blast_Score=92, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR004017
- InterPro:   IPR012285
- InterPro:   IPR012257 [H]

Pfam domain/function: PF02754 CCG [H]

EC number: NA

Molecular weight: Translated: 47239; Mature: 47239

Theoretical pI: Translated: 7.64; Mature: 7.64

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
3.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTHFSLAQLADPHVAEAEKILRTCVHCGFCTATCPTYVLLGDELDSPRGRIYLIKDMLE
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCCCCEEEEEHHHHC
NDRPATEQEVKHIDRCLSCLSCMTTCPSGVNYMHLVDQARVHIEKTYVRPPQDRLMRAML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AKVLPYPDRFRLALMGAMVGKPFAPLLAKIPGLKPLAAMLRLSPGMPNGRAHHEAPGTFP
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
AQGTRRARVALLRGCAQPVLRPSIDDAAIRLLTRLGVEVVRVEGEGCCGALVHHMGREEE
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCHH
AHAFARNNVDAWTREMDGPGLDAILVTTSGCGTPIKDYGHMLRLDAAYKDKAARVSAITR
HHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHEEEECHHHHHHHHHHHHHHH
DISEFLVTLDLPKADAPLGRRVAYHSACSLQHGQKVKGPPVELLRAVGFEVAEPFDPHLC
HHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCEE
CGSAGTYNMLQSEIADQLKAKKVGTLEALSPDIIAAGNIGCMAQIGSGTDVPVAHTVELL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEECCCCCEEEEECCCCCCCHHHHHHHH
DWATGGPAPAGISGTAKAA
HHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MQTHFSLAQLADPHVAEAEKILRTCVHCGFCTATCPTYVLLGDELDSPRGRIYLIKDMLE
CCCCCCHHHHCCCCHHHHHHHHHHHHHCCCHHHCCCEEEEECCCCCCCCCEEEEEHHHHC
NDRPATEQEVKHIDRCLSCLSCMTTCPSGVNYMHLVDQARVHIEKTYVRPPQDRLMRAML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
AKVLPYPDRFRLALMGAMVGKPFAPLLAKIPGLKPLAAMLRLSPGMPNGRAHHEAPGTFP
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCC
AQGTRRARVALLRGCAQPVLRPSIDDAAIRLLTRLGVEVVRVEGEGCCGALVHHMGREEE
CCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCHH
AHAFARNNVDAWTREMDGPGLDAILVTTSGCGTPIKDYGHMLRLDAAYKDKAARVSAITR
HHHHHHCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHEEEECHHHHHHHHHHHHHHH
DISEFLVTLDLPKADAPLGRRVAYHSACSLQHGQKVKGPPVELLRAVGFEVAEPFDPHLC
HHHHHHEEECCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCHHCCCCCCCEE
CGSAGTYNMLQSEIADQLKAKKVGTLEALSPDIIAAGNIGCMAQIGSGTDVPVAHTVELL
CCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCEEECCCCCEEEEECCCCCCCHHHHHHHH
DWATGGPAPAGISGTAKAA
HHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8606183; 9278503 [H]