| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
Click here to switch to the map view.
The map label for this gene is serB [C]
Identifier: 154245604
GI number: 154245604
Start: 1879353
End: 1880252
Strand: Direct
Name: serB [C]
Synonym: Xaut_1660
Alternate gene names: 154245604
Gene position: 1879353-1880252 (Clockwise)
Preceding gene: 154245602
Following gene: 154245610
Centisome position: 35.4
GC content: 69.78
Gene sequence:
>900_bases ATGGCCTATGTCGCGACGCTGATCTCAAACCCATCTGCCCCGGCTTTGACCCGGGAGGCAATCCACGATGCGCGCGCGGT GCTGCCCGAAGCGCAGGAGGCCGTGGTGCTCGCCCCCGACGTGGCCGTGGACATCCATTTCGCCCCGCCGCTGGGCACCG ATGCCCGGGAACTGGCCGATGCGGTCCGCGCCGCCCTCGGGGATGCGCCCATCGACGTGGTGGTGCAGCTAGAGGCGGCC CGGCGCAAGCAGCTTTTCCTCGCCGACATGGATTCCACCATGATCGGGCAGGAATGCATCGACGAACTGGCGGATCTCGT TGGCGTGAAGGCCCATGTGGCCGCCATCACCGAGCGGGCCATGCGCGGGGAGATCGCCTTCGAGCCGGCGCTGCGCGAGC GGGTGGCGCTGCTGCGCGGCCTGCCGGCCGGCGTGGTGGCCGACGTGCTGCGCGAGCGCATCAGCCTCACCCCCGGCGGG CTCGAGCTGGTGGGTACCATGAAGGCCAACGGCGCCTATACGGCGCTGGTCTCCGGCGGCTTCACCGTGTTTACGAGCGC CATCGCCGAGCGCATCGGCTTCGACGAGCACCGGGCCAACATCCTGCTCATCGACGAGGACCGCTTCGTCGGCGCGGTGG CGGAGCCCATCCTCGGCCGCGATGCCAAGCTCGCCGCCCTCGAGGAACTGCGCGACCGCATGCACCTTGCCCCGTCCGAG ACCATGGCGGTGGGCGACGGCGCCAACGACCTCGCCATGCTGCAGGAGGCCGGGGTCGGCGTCGCCTATCACGCCAAGCC AGCGGTGGCGGCTGCCGCCCATGTGCGCATCGATTACGGCGACCTCACCGCTTTGCTCTACATGCAGGGCTATGCGCTGA GCGAGTTCCACACCGCCTGA
Upstream 100 bases:
>100_bases CTCGGCGAGCGCCATCGCGAGGGCCGACTTGCCGCTGGCGGTGGGACCTGCGATGAGCACCGCCTGCGGCCCATTCCCCT GTTCGAGTACCGATACTGCC
Downstream 100 bases:
>100_bases GGCGGGATAAGCTCTCCCTGTACCCTTACGCCGCCGTCATGCCCCGGACCAGCCGGGGATGACGGCGGCGCGTCAGCTCA GTTCAGCGGGATCGTCACGA
Product: phosphoserine phosphatase SerB
Products: NA
Alternate protein names: PSP; PSPase; O-phosphoserine phosphohydrolase [H]
Number of amino acids: Translated: 299; Mature: 298
Protein sequence:
>299_residues MAYVATLISNPSAPALTREAIHDARAVLPEAQEAVVLAPDVAVDIHFAPPLGTDARELADAVRAALGDAPIDVVVQLEAA RRKQLFLADMDSTMIGQECIDELADLVGVKAHVAAITERAMRGEIAFEPALRERVALLRGLPAGVVADVLRERISLTPGG LELVGTMKANGAYTALVSGGFTVFTSAIAERIGFDEHRANILLIDEDRFVGAVAEPILGRDAKLAALEELRDRMHLAPSE TMAVGDGANDLAMLQEAGVGVAYHAKPAVAAAAHVRIDYGDLTALLYMQGYALSEFHTA
Sequences:
>Translated_299_residues MAYVATLISNPSAPALTREAIHDARAVLPEAQEAVVLAPDVAVDIHFAPPLGTDARELADAVRAALGDAPIDVVVQLEAA RRKQLFLADMDSTMIGQECIDELADLVGVKAHVAAITERAMRGEIAFEPALRERVALLRGLPAGVVADVLRERISLTPGG LELVGTMKANGAYTALVSGGFTVFTSAIAERIGFDEHRANILLIDEDRFVGAVAEPILGRDAKLAALEELRDRMHLAPSE TMAVGDGANDLAMLQEAGVGVAYHAKPAVAAAAHVRIDYGDLTALLYMQGYALSEFHTA >Mature_298_residues AYVATLISNPSAPALTREAIHDARAVLPEAQEAVVLAPDVAVDIHFAPPLGTDARELADAVRAALGDAPIDVVVQLEAAR RKQLFLADMDSTMIGQECIDELADLVGVKAHVAAITERAMRGEIAFEPALRERVALLRGLPAGVVADVLRERISLTPGGL ELVGTMKANGAYTALVSGGFTVFTSAIAERIGFDEHRANILLIDEDRFVGAVAEPILGRDAKLAALEELRDRMHLAPSET MAVGDGANDLAMLQEAGVGVAYHAKPAVAAAAHVRIDYGDLTALLYMQGYALSEFHTA
Specific function: Unknown
COG id: COG0560
COG function: function code E; Phosphoserine phosphatase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI46249388, Length=170, Percent_Identity=32.3529411764706, Blast_Score=73, Evalue=3e-13, Organism=Escherichia coli, GI1790849, Length=232, Percent_Identity=40.0862068965517, Blast_Score=151, Evalue=6e-38, Organism=Caenorhabditis elegans, GI115534454, Length=182, Percent_Identity=30.7692307692308, Blast_Score=65, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115534456, Length=178, Percent_Identity=32.0224719101124, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6321647, Length=231, Percent_Identity=36.7965367965368, Blast_Score=157, Evalue=2e-39, Organism=Drosophila melanogaster, GI24661601, Length=190, Percent_Identity=31.5789473684211, Blast_Score=75, Evalue=8e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR006383 - InterPro: IPR023190 - InterPro: IPR004469 [H]
Pfam domain/function: PF01842 ACT; PF00702 Hydrolase [H]
EC number: =3.1.3.3 [H]
Molecular weight: Translated: 31605; Mature: 31473
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAYVATLISNPSAPALTREAIHDARAVLPEAQEAVVLAPDVAVDIHFAPPLGTDARELAD CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHH AVRAALGDAPIDVVVQLEAARRKQLFLADMDSTMIGQECIDELADLVGVKAHVAAITERA HHHHHHCCCCEEEEEEECHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MRGEIAFEPALRERVALLRGLPAGVVADVLRERISLTPGGLELVGTMKANGAYTALVSGG HCCCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEECCC FTVFTSAIAERIGFDEHRANILLIDEDRFVGAVAEPILGRDAKLAALEELRDRMHLAPSE HHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC TMAVGDGANDLAMLQEAGVGVAYHAKPAVAAAAHVRIDYGDLTALLYMQGYALSEFHTA CEEECCCCHHHHHHHHCCCCEEEECCCHHHHEEEEEEEHHHHHHHHHHHCCHHHHHCCC >Mature Secondary Structure AYVATLISNPSAPALTREAIHDARAVLPEAQEAVVLAPDVAVDIHFAPPLGTDARELAD CEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCEEECCCEEEEEEECCCCCCCHHHHHH AVRAALGDAPIDVVVQLEAARRKQLFLADMDSTMIGQECIDELADLVGVKAHVAAITERA HHHHHHCCCCEEEEEEECHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MRGEIAFEPALRERVALLRGLPAGVVADVLRERISLTPGGLELVGTMKANGAYTALVSGG HCCCCEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEECCC FTVFTSAIAERIGFDEHRANILLIDEDRFVGAVAEPILGRDAKLAALEELRDRMHLAPSE HHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC TMAVGDGANDLAMLQEAGVGVAYHAKPAVAAAAHVRIDYGDLTALLYMQGYALSEFHTA CEEECCCCHHHHHHHHCCCCEEEECCCHHHHEEEEEEEHHHHHHHHHHHCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9389475 [H]