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The map label for this gene is rssA [H]

Identifier: 154245591

GI number: 154245591

Start: 1866324

End: 1867445

Strand: Reverse

Name: rssA [H]

Synonym: Xaut_1647

Alternate gene names: 154245591

Gene position: 1867445-1866324 (Counterclockwise)

Preceding gene: 154245592

Following gene: 154245590

Centisome position: 35.18

GC content: 71.84

Gene sequence:

>1122_bases
ATGTTCCAGTCCCTCCACTGGCGCTCGACCCCGGCGGTCGCTCCCGAAGCGGCCAGCCCGGAAGCCGTAGCACCGACGCG
CGCTGCTCCCGGCTCCCCCCCTTCCCTTCCCAGGACGCCGGGCGGCGCCGACGATGGCGCGCCTCCCGATTTCGACACCC
CCGCCCACCGGCCGGTGCGCGACCGGGGCCGCCCCGCCATCGGCATCGCGCTGGGCGGCGGAGCGGCGCGCGGCTTTGCC
CATATCGGCGTGTTGAAGGTGCTGCGGCAGGCGGGCATCCACCCCGCCGTGGTGGCCGGCACCTCCATCGGCGCGGTGGT
GGGGGGCATCGCCGCCGCCGGAAAGCTCGACGAGCTGGAAGAGTGGGCGATCAGCCTCACCAAGCGCAATGTGCTGGGGC
TGCTGGATTTCGCCCTGGGCGGGGCGGGCCTCATCGGGGGCCGGCGGCTGGTGGAGCTGATGCGCCGGAACGTGGGCGAG
GTCTCCATCGAGAACCTGCCGGTGGTGTTCGCCGCCATCGCCACCGAGCTTGGCACGGGCCATGAAATCTGGCTCACCCG
CGGCGATTTCGTGGAGGCGATCCGTGCCTCCTACGCCCTGCCCGGCATCTTCACCCCGGTGAAGATCGGCGGGCGGTGGC
TGATGGACGGGGCGCTGGTCAATCCTGTCCCGGTCTCGGCCGCCCGCGCCATGGGCGCGCGCATGGTCATCGCGGTGAAC
CTCAATGCCGACGTGTTCGGCCACGGCACGGTCATCCAGGACCATGGCGGCGTGGTGGAGCGGGTGGCCGAGGCGGCGCT
GGGAGAGAAGAAGGAAGGCATCGCCGCCATGCTGAGCCCGGAGCGGCTGAAGCGGCAGTTCTTCGCCGGCCACGGCAGCC
ATGCCAGCGACGGTCCGCGCGGCCTCTCGACCGTGATGATCGACGCCTTCAACATCACCCAGGATCGCATCGCCCGCTCG
CGGCTGGCCGGCGATCCCCCCGACATCATGCTCTCGCCCAAGCTCGGGAAAATCGGCCTGTTCGAGTTTCCGCGCGCACG
GGAAGCCATCGCCGCCGGGGCCGAGGCGGCGGAGCGCGCGCTCCCCGACATCCAGGATGCCATGGTGGCGCTGGGCGCCT
GA

Upstream 100 bases:

>100_bases
CGAAAGAGGGCGGGCACCGCGTTCTCCGTCTCGAGGTTCAGGGACGGATTTACCGATCAGCCTGGGTCAGGCTGATCGGA
CCCGGCTCCAGGAGGCGCGC

Downstream 100 bases:

>100_bases
GGGGGCGGATCGGCGAGCCATGCGCCGGGCGCGGTGCAAGACAAAACGCCAGCGGCTAAGGTGGCGTACCGTCGATCCAC
GAAAGCACAGCGATGTTCTA

Product: patatin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 373; Mature: 373

Protein sequence:

>373_residues
MFQSLHWRSTPAVAPEAASPEAVAPTRAAPGSPPSLPRTPGGADDGAPPDFDTPAHRPVRDRGRPAIGIALGGGAARGFA
HIGVLKVLRQAGIHPAVVAGTSIGAVVGGIAAAGKLDELEEWAISLTKRNVLGLLDFALGGAGLIGGRRLVELMRRNVGE
VSIENLPVVFAAIATELGTGHEIWLTRGDFVEAIRASYALPGIFTPVKIGGRWLMDGALVNPVPVSAARAMGARMVIAVN
LNADVFGHGTVIQDHGGVVERVAEAALGEKKEGIAAMLSPERLKRQFFAGHGSHASDGPRGLSTVMIDAFNITQDRIARS
RLAGDPPDIMLSPKLGKIGLFEFPRAREAIAAGAEAAERALPDIQDAMVALGA

Sequences:

>Translated_373_residues
MFQSLHWRSTPAVAPEAASPEAVAPTRAAPGSPPSLPRTPGGADDGAPPDFDTPAHRPVRDRGRPAIGIALGGGAARGFA
HIGVLKVLRQAGIHPAVVAGTSIGAVVGGIAAAGKLDELEEWAISLTKRNVLGLLDFALGGAGLIGGRRLVELMRRNVGE
VSIENLPVVFAAIATELGTGHEIWLTRGDFVEAIRASYALPGIFTPVKIGGRWLMDGALVNPVPVSAARAMGARMVIAVN
LNADVFGHGTVIQDHGGVVERVAEAALGEKKEGIAAMLSPERLKRQFFAGHGSHASDGPRGLSTVMIDAFNITQDRIARS
RLAGDPPDIMLSPKLGKIGLFEFPRAREAIAAGAEAAERALPDIQDAMVALGA
>Mature_373_residues
MFQSLHWRSTPAVAPEAASPEAVAPTRAAPGSPPSLPRTPGGADDGAPPDFDTPAHRPVRDRGRPAIGIALGGGAARGFA
HIGVLKVLRQAGIHPAVVAGTSIGAVVGGIAAAGKLDELEEWAISLTKRNVLGLLDFALGGAGLIGGRRLVELMRRNVGE
VSIENLPVVFAAIATELGTGHEIWLTRGDFVEAIRASYALPGIFTPVKIGGRWLMDGALVNPVPVSAARAMGARMVIAVN
LNADVFGHGTVIQDHGGVVERVAEAALGEKKEGIAAMLSPERLKRQFFAGHGSHASDGPRGLSTVMIDAFNITQDRIARS
RLAGDPPDIMLSPKLGKIGLFEFPRAREAIAAGAEAAERALPDIQDAMVALGA

Specific function: Unknown

COG id: COG1752

COG function: function code R; Predicted esterase of the alpha-beta hydrolase superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 patatin domain [H]

Homologues:

Organism=Homo sapiens, GI260656041, Length=187, Percent_Identity=33.1550802139037, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI116256487, Length=187, Percent_Identity=33.1550802139037, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI260656039, Length=187, Percent_Identity=33.1550802139037, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI260656043, Length=187, Percent_Identity=33.1550802139037, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI260656037, Length=187, Percent_Identity=33.1550802139037, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI148727335, Length=201, Percent_Identity=32.8358208955224, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI148727290, Length=201, Percent_Identity=32.8358208955224, Blast_Score=87, Evalue=2e-17,
Organism=Escherichia coli, GI226510936, Length=298, Percent_Identity=40.2684563758389, Blast_Score=215, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI193204778, Length=208, Percent_Identity=29.8076923076923, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI71997299, Length=170, Percent_Identity=31.1764705882353, Blast_Score=65, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71997289, Length=170, Percent_Identity=31.1764705882353, Blast_Score=65, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323581, Length=206, Percent_Identity=29.126213592233, Blast_Score=86, Evalue=8e-18,
Organism=Drosophila melanogaster, GI281376913, Length=185, Percent_Identity=32.972972972973, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI28571388, Length=185, Percent_Identity=32.4324324324324, Blast_Score=80, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016035
- InterPro:   IPR001423
- InterPro:   IPR002641 [H]

Pfam domain/function: PF01734 Patatin [H]

EC number: NA

Molecular weight: Translated: 38647; Mature: 38647

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQSLHWRSTPAVAPEAASPEAVAPTRAAPGSPPSLPRTPGGADDGAPPDFDTPAHRPVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
DRGRPAIGIALGGGAARGFAHIGVLKVLRQAGIHPAVVAGTSIGAVVGGIAAAGKLDELE
HCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCHHHHH
EWAISLTKRNVLGLLDFALGGAGLIGGRRLVELMRRNVGEVSIENLPVVFAAIATELGTG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCC
HEIWLTRGDFVEAIRASYALPGIFTPVKIGGRWLMDGALVNPVPVSAARAMGARMVIAVN
CEEEEECHHHHHHHHHHHCCCCCCCCCEECCEEEECCCCCCCCCHHHHHHCCCEEEEEEE
LNADVFGHGTVIQDHGGVVERVAEAALGEKKEGIAAMLSPERLKRQFFAGHGSHASDGPR
CCCCEEECCCEEECCCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCC
GLSTVMIDAFNITQDRIARSRLAGDPPDIMLSPKLGKIGLFEFPRAREAIAAGAEAAERA
CCEEEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LPDIQDAMVALGA
CCHHHHHHHHHCC
>Mature Secondary Structure
MFQSLHWRSTPAVAPEAASPEAVAPTRAAPGSPPSLPRTPGGADDGAPPDFDTPAHRPVR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
DRGRPAIGIALGGGAARGFAHIGVLKVLRQAGIHPAVVAGTSIGAVVGGIAAAGKLDELE
HCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHCCCHHHHH
EWAISLTKRNVLGLLDFALGGAGLIGGRRLVELMRRNVGEVSIENLPVVFAAIATELGTG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCEECCCCCHHHHHHHHHHCCC
HEIWLTRGDFVEAIRASYALPGIFTPVKIGGRWLMDGALVNPVPVSAARAMGARMVIAVN
CEEEEECHHHHHHHHHHHCCCCCCCCCEECCEEEECCCCCCCCCHHHHHHCCCEEEEEEE
LNADVFGHGTVIQDHGGVVERVAEAALGEKKEGIAAMLSPERLKRQFFAGHGSHASDGPR
CCCCEEECCCEEECCCCHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHCCCCCCCCCCCC
GLSTVMIDAFNITQDRIARSRLAGDPPDIMLSPKLGKIGLFEFPRAREAIAAGAEAAERA
CCEEEEEEECCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LPDIQDAMVALGA
CCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8282700; 9097039; 8905232; 9278503 [H]