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The map label for this gene is erfK [H]

Identifier: 154245584

GI number: 154245584

Start: 1858640

End: 1859272

Strand: Direct

Name: erfK [H]

Synonym: Xaut_1639

Alternate gene names: 154245584

Gene position: 1858640-1859272 (Clockwise)

Preceding gene: 154245582

Following gene: 154245585

Centisome position: 35.01

GC content: 69.35

Gene sequence:

>633_bases
ATGATGCCATCCACGTTCAAGACCTTGACCTTTGCCGCCCTGCTCCAGGTCGGCGTGTTCGCCTTCGCTTCTGCCGCCAG
CGCCCAGGTCGGCCCGCGCGGCGCGCCGGGCGCCGTGATGGACATCGACGACCAGCCGGGCCTCGAGGCGCCGCAGGACG
ACTACGCCCAGATGGACCCCGCCTTCCGCCGCCAGCCGGTGTATTTCCGCACCACCGAGAAGCCGGGCACCATCGTCATC
CACACCAACGAGCGCTTCCTGTACCTGGTGCAGGGTGACAACCGCGCCATGCGCTACGGCATCGGCGTCGGCCGCGACGG
CTTCCAGTGGTCGGGCCTCAAGAGCGTCGAGCGCAAGGCCGAATGGCCCGACTGGACGCCCCCGGCGGAGATGATCCAGC
GCCAGCCCTACCTGCCGCGCTTCATGGCCGGCGGCCCCGGCAATCCCATGGGCGCCCGCGCGCTCTACATCAGCGGCACC
GTCTACCGCATCCACGGCACCAACCAGCCGCAGACCATCGGCTATGCCGTGTCCTCGGGCTGCTTCCGCCTGGTGAACAG
CGACATCATCGATCTCTACGGCCGCGTGCCCGTGGGCACCAAGGTCGTCGTGCGCCAGCAGGCCGCCCTCTGA

Upstream 100 bases:

>100_bases
TGGCCACGGAGCGGAATATGCTGCCCCGGTTCCGACCTATTCACGTGTCACCGCTGTCAAAAGGGCGGATTCGCCCTCGG
ACGCGTAAAGAGAGGCCGGC

Downstream 100 bases:

>100_bases
GGGCGGTCCTTTTTCTCCTTATTTCTCACTGGGGGCATTCATGAAGACGATCCTGGCGCTTCTGGCCGGCGCCACCTTTG
CGCTTGCCGCAACGGCGGCT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MMPSTFKTLTFAALLQVGVFAFASAASAQVGPRGAPGAVMDIDDQPGLEAPQDDYAQMDPAFRRQPVYFRTTEKPGTIVI
HTNERFLYLVQGDNRAMRYGIGVGRDGFQWSGLKSVERKAEWPDWTPPAEMIQRQPYLPRFMAGGPGNPMGARALYISGT
VYRIHGTNQPQTIGYAVSSGCFRLVNSDIIDLYGRVPVGTKVVVRQQAAL

Sequences:

>Translated_210_residues
MMPSTFKTLTFAALLQVGVFAFASAASAQVGPRGAPGAVMDIDDQPGLEAPQDDYAQMDPAFRRQPVYFRTTEKPGTIVI
HTNERFLYLVQGDNRAMRYGIGVGRDGFQWSGLKSVERKAEWPDWTPPAEMIQRQPYLPRFMAGGPGNPMGARALYISGT
VYRIHGTNQPQTIGYAVSSGCFRLVNSDIIDLYGRVPVGTKVVVRQQAAL
>Mature_210_residues
MMPSTFKTLTFAALLQVGVFAFASAASAQVGPRGAPGAVMDIDDQPGLEAPQDDYAQMDPAFRRQPVYFRTTEKPGTIVI
HTNERFLYLVQGDNRAMRYGIGVGRDGFQWSGLKSVERKAEWPDWTPPAEMIQRQPYLPRFMAGGPGNPMGARALYISGT
VYRIHGTNQPQTIGYAVSSGCFRLVNSDIIDLYGRVPVGTKVVVRQQAAL

Specific function: Responsible, at least in part, for anchoring of the major outer membrane lipoprotein (Lpp, also known as the Braun lipoprotein) to the peptidoglycan via a meso-diaminopimelyl-L-Lys- bond on the terminal residue of Lpp [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1788299, Length=137, Percent_Identity=43.0656934306569, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787040, Length=135, Percent_Identity=45.1851851851852, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787968, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-15,
Organism=Escherichia coli, GI1787356, Length=137, Percent_Identity=38.6861313868613, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005490 [H]

Pfam domain/function: PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 23060; Mature: 23060

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMPSTFKTLTFAALLQVGVFAFASAASAQVGPRGAPGAVMDIDDQPGLEAPQDDYAQMDP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCH
AFRRQPVYFRTTEKPGTIVIHTNERFLYLVQGDNRAMRYGIGVGRDGFQWSGLKSVERKA
HHHCCCEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHC
EWPDWTPPAEMIQRQPYLPRFMAGGPGNPMGARALYISGTVYRIHGTNQPQTIGYAVSSG
CCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCEEEEEECEEEEEECCCCCCEEEHHHHHH
CFRLVNSDIIDLYGRVPVGTKVVVRQQAAL
HHHHHCCHHHHHHCCCCCCCEEEEEECCCC
>Mature Secondary Structure
MMPSTFKTLTFAALLQVGVFAFASAASAQVGPRGAPGAVMDIDDQPGLEAPQDDYAQMDP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCHHHHCCH
AFRRQPVYFRTTEKPGTIVIHTNERFLYLVQGDNRAMRYGIGVGRDGFQWSGLKSVERKA
HHHCCCEEEEECCCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCCCCHHHHHHC
EWPDWTPPAEMIQRQPYLPRFMAGGPGNPMGARALYISGTVYRIHGTNQPQTIGYAVSSG
CCCCCCCHHHHHHCCCCCCHHHCCCCCCCCCCEEEEEECEEEEEECCCCCCEEEHHHHHH
CFRLVNSDIIDLYGRVPVGTKVVVRQQAAL
HHHHHCCHHHHHHCCCCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7592411; 9097040; 9278503; 9298646 [H]