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The map label for this gene is tctD [H]

Identifier: 154245480

GI number: 154245480

Start: 1741194

End: 1741865

Strand: Reverse

Name: tctD [H]

Synonym: Xaut_1533

Alternate gene names: 154245480

Gene position: 1741865-1741194 (Counterclockwise)

Preceding gene: 154245481

Following gene: 154245479

Centisome position: 32.81

GC content: 65.77

Gene sequence:

>672_bases
ATGCGACTTCTTCTGGTTGAGGACAATCTGGAGCTTGCCGGCTGGCTGGCGAAGATCCTGCGGCAGGACAATTACGTGGT
CGATGTCTTCCACGACGGGGAAGAGGCCGACCACGCGCTCGCCGTTGCCGCCTATGATCTTGTCATCCTCGACCTCACGC
TGCCGAAGATCAACGGCATGCAGTTGCTGCGCCGCATCCGCAGCCGCAAGGATACGGTGCCGGTCATCATCCTCACCGCC
AATGCGAGCCTCGACGGCCGCGTCGCCGGCCTCGACGAAGGGGCGGACGACTATCTCGCCAAGCCCTTCGACATCGCCGA
GCTCGAAGCCCGCATCCGCGTGCAGCTGCGCCGCTCGGCGCGGCGGCCGGACCCGGTGATCAGCTGCGGCGCGCTGGCTT
TCGATACCAATACCCGCCTGTTCGCCCTCTCCGGCACCCCGCTCGCCCTCACCCCGCGCGAGCATGCGGTGCTGGAGATG
CTGCTCATGAAATCGGGGCAGACCGTCAGCAAGGCCCAGCTCTCCCAGAGCATCTTCGGCCTCGACGACCTTGCCGATCC
CAGCGCCATCGAGATCTATGTGCACCGCGTGCGCAAGAAGCTGGAGGGCAGCGACGTGCGCATCGTCACCCTGCGCGGCC
TCGGCTACCTGCTGCAGCACGATGCGCATTGA

Upstream 100 bases:

>100_bases
TCCATTGGTCAAGCCCGCGCGGCGCCTGAGTGTGGCCCTCTCGGCATCGGTCGAAGACCGAAGCCGTTGGCACTAGTCTG
CCCGCCGGGACAGGAAACCC

Downstream 100 bases:

>100_bases
GAGCCTGCGCCTCCAGCTCCTGTGCTGGCTGCTGCTGCCGCTGGCGGGGCTGGTGGCGCTCAACGTGTGGACCAGCGGAC
GGCAGGCCCGCGCCACCGCC

Product: two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MRLLLVEDNLELAGWLAKILRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGMQLLRRIRSRKDTVPVIILTA
NASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSARRPDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEM
LLMKSGQTVSKAQLSQSIFGLDDLADPSAIEIYVHRVRKKLEGSDVRIVTLRGLGYLLQHDAH

Sequences:

>Translated_223_residues
MRLLLVEDNLELAGWLAKILRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGMQLLRRIRSRKDTVPVIILTA
NASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSARRPDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEM
LLMKSGQTVSKAQLSQSIFGLDDLADPSAIEIYVHRVRKKLEGSDVRIVTLRGLGYLLQHDAH
>Mature_223_residues
MRLLLVEDNLELAGWLAKILRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGMQLLRRIRSRKDTVPVIILTA
NASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSARRPDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEM
LLMKSGQTVSKAQLSQSIFGLDDLADPSAIEIYVHRVRKKLEGSDVRIVTLRGLGYLLQHDAH

Specific function: Transcriptional activator of the tctI tricarboxylate transport system operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789402, Length=218, Percent_Identity=39.4495412844037, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1790552, Length=218, Percent_Identity=38.9908256880734, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1786784, Length=223, Percent_Identity=36.7713004484305, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI87082012, Length=218, Percent_Identity=34.4036697247706, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787375, Length=221, Percent_Identity=34.841628959276, Blast_Score=127, Evalue=5e-31,
Organism=Escherichia coli, GI1789809, Length=231, Percent_Identity=32.034632034632, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1786911, Length=222, Percent_Identity=35.1351351351351, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1786599, Length=220, Percent_Identity=31.3636363636364, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI1790860, Length=224, Percent_Identity=34.8214285714286, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI2367329, Length=228, Percent_Identity=36.8421052631579, Blast_Score=112, Evalue=2e-26,
Organism=Escherichia coli, GI1788394, Length=226, Percent_Identity=30.9734513274336, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1787229, Length=228, Percent_Identity=29.3859649122807, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790863, Length=233, Percent_Identity=29.6137339055794, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI145693140, Length=231, Percent_Identity=26.4069264069264, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790299, Length=105, Percent_Identity=36.1904761904762, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788550, Length=107, Percent_Identity=32.7102803738318, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1790437, Length=110, Percent_Identity=31.8181818181818, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788713, Length=96, Percent_Identity=35.4166666666667, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 24712; Mature: 24712

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLLLVEDNLELAGWLAKILRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGM
CEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHEEEEEEEEEEEECCCCCHH
QLLRRIRSRKDTVPVIILTANASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSA
HHHHHHHCCCCCCCEEEEEECCCCCCEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHC
RRPDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEMLLMKSGQTVSKAQLSQSIFG
CCCCCCEEECEEEEECCCEEEEEECCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
LDDLADPSAIEIYVHRVRKKLEGSDVRIVTLRGLGYLLQHDAH
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCC
>Mature Secondary Structure
MRLLLVEDNLELAGWLAKILRQDNYVVDVFHDGEEADHALAVAAYDLVILDLTLPKINGM
CEEEEEECCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEHEEEEEEEEEEEECCCCCHH
QLLRRIRSRKDTVPVIILTANASLDGRVAGLDEGADDYLAKPFDIAELEARIRVQLRRSA
HHHHHHHCCCCCCCEEEEEECCCCCCEEECCCCCCHHHHCCCCCHHHHHHHHHHHHHHHC
RRPDPVISCGALAFDTNTRLFALSGTPLALTPREHAVLEMLLMKSGQTVSKAQLSQSIFG
CCCCCCEEECEEEEECCCEEEEEECCCEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHCC
LDDLADPSAIEIYVHRVRKKLEGSDVRIVTLRGLGYLLQHDAH
CCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2666399; 11083839; 11677609 [H]