Click here to switch to the map view.

The map label for this gene is yddE [C]

Identifier: 154245274

GI number: 154245274

Start: 1521563

End: 1522471

Strand: Direct

Name: yddE [C]

Synonym: Xaut_1326

Alternate gene names: 154245274

Gene position: 1521563-1522471 (Clockwise)

Preceding gene: 154245273

Following gene: 154245275

Centisome position: 28.66

GC content: 69.75

Gene sequence:

>909_bases
ATGCCGCGCCGCTTCGTGACCCTGGATGTGTTCACCTCCCGCCCGTTCGGAGGCAATCCGCTCGCCGTGGTGCTCGACGC
CCAGGGGCTCGACGACGCGGCGATGCAGCAGATCTCCCGCGAATTCAACGTCTCCGAGACGGTGTTCGTGCTGCCGCCGA
AGAACCCCGCCAACCGGGCGCGCATCCGCATCTTCTCCGTCGCCCACGAGATGCCGTTCGCCGGCCATCCCACGGTGGGG
GCGGCGGTGCTGCTGGCGCTGGAGGACAAGCTGGTCAAGGGCACCCTGAAGATCGAAGAGCCTATCGGCACCGTCACCTG
TGAGGTGACGACCCAAAGTGCGGGCCAGGGCGCCGGCTCACGCAAGGGGGTGGCGGTGTTCACCGCGCCGCGCAAGGGCG
AGCTGGAGGAGGTGGACATCTCCCGTGCCGCCTGCGCCGAGGCGCTGAATCTGGATGAGAGCGACATCGGCTTCGACGCC
CATCGCCCGGTGGTGGCCTCGGCCGGCGTGCCGTTCCTGTTCGTGCCGCTGGCCAACCTCACCGCGTTGGCCCGCGCCCG
GCCGGACGAGGCGGCTTTCATCAATTCCCTCGGCGGCTTCGGCGAGGCGCTCTACCTCTACACCCTGGACGAGGAGGGCG
ACGCCGATTTCCGCGCCCGCATGTTCTCCCCCGGCCTCGGCACCGAGGAGGACCCCGCCACCGGTGCCGCTGCCGCCGCC
TTCCCCTGCGTCCTGCTCGATGCCGAGAACCGGGTGGACGGCCACCACAAGGTGCGCATCGACCAGGGCTTCGAGATGGG
CCGCCCCAGCCGGGTGGACCTCGGCTTCACCGTGAAGGGTGGGCAGGTGCTCGACGCCACCATCGGTGGCTCCGCCGTGG
TGATCACCGAAGGGGTGCTCCACATCTGA

Upstream 100 bases:

>100_bases
TGAGGCAAAAATGTGGCGGCCACCCCCGTGGCTGCCGTGACCCGGAAGACGCCGTGCGCGTGCATGCTGCGGTCACAGAG
ACCTGTAGAGACCTGTTCGC

Downstream 100 bases:

>100_bases
GCCTTATCAATATGTGGATTTGACAGAACTCACGGTAGGCGTGGGAAATAGCGAGCAGTCTGACCTTGGCTGGGACGCGA
TCGCTCCTATGTGTGCTGCA

Product: PhzF family phenazine biosynthesis protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MPRRFVTLDVFTSRPFGGNPLAVVLDAQGLDDAAMQQISREFNVSETVFVLPPKNPANRARIRIFSVAHEMPFAGHPTVG
AAVLLALEDKLVKGTLKIEEPIGTVTCEVTTQSAGQGAGSRKGVAVFTAPRKGELEEVDISRAACAEALNLDESDIGFDA
HRPVVASAGVPFLFVPLANLTALARARPDEAAFINSLGGFGEALYLYTLDEEGDADFRARMFSPGLGTEEDPATGAAAAA
FPCVLLDAENRVDGHHKVRIDQGFEMGRPSRVDLGFTVKGGQVLDATIGGSAVVITEGVLHI

Sequences:

>Translated_302_residues
MPRRFVTLDVFTSRPFGGNPLAVVLDAQGLDDAAMQQISREFNVSETVFVLPPKNPANRARIRIFSVAHEMPFAGHPTVG
AAVLLALEDKLVKGTLKIEEPIGTVTCEVTTQSAGQGAGSRKGVAVFTAPRKGELEEVDISRAACAEALNLDESDIGFDA
HRPVVASAGVPFLFVPLANLTALARARPDEAAFINSLGGFGEALYLYTLDEEGDADFRARMFSPGLGTEEDPATGAAAAA
FPCVLLDAENRVDGHHKVRIDQGFEMGRPSRVDLGFTVKGGQVLDATIGGSAVVITEGVLHI
>Mature_301_residues
PRRFVTLDVFTSRPFGGNPLAVVLDAQGLDDAAMQQISREFNVSETVFVLPPKNPANRARIRIFSVAHEMPFAGHPTVGA
AVLLALEDKLVKGTLKIEEPIGTVTCEVTTQSAGQGAGSRKGVAVFTAPRKGELEEVDISRAACAEALNLDESDIGFDAH
RPVVASAGVPFLFVPLANLTALARARPDEAAFINSLGGFGEALYLYTLDEEGDADFRARMFSPGLGTEEDPATGAAAAAF
PCVLLDAENRVDGHHKVRIDQGFEMGRPSRVDLGFTVKGGQVLDATIGGSAVVITEGVLHI

Specific function: Unknown

COG id: COG0384

COG function: function code R; Predicted epimerase, PhzC/PhzF homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phzF family [H]

Homologues:

Organism=Escherichia coli, GI1787737, Length=306, Percent_Identity=30.3921568627451, Blast_Score=101, Evalue=5e-23,
Organism=Saccharomyces cerevisiae, GI6321818, Length=307, Percent_Identity=23.1270358306189, Blast_Score=76, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003719 [H]

Pfam domain/function: PF02567 PhzC-PhzF [H]

EC number: NA

Molecular weight: Translated: 31925; Mature: 31793

Theoretical pI: Translated: 4.68; Mature: 4.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRRFVTLDVFTSRPFGGNPLAVVLDAQGLDDAAMQQISREFNVSETVFVLPPKNPANRA
CCCEEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCE
RIRIFSVAHEMPFAGHPTVGAAVLLALEDKLVKGTLKIEEPIGTVTCEVTTQSAGQGAGS
EEEEEEEECCCCCCCCCCHHHEEEEEEHHHHEEEEEEEECCCCEEEEEEEECCCCCCCCC
RKGVAVFTAPRKGELEEVDISRAACAEALNLDESDIGFDAHRPVVASAGVPFLFVPLANL
CCCEEEEECCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEHHHH
TALARARPDEAAFINSLGGFGEALYLYTLDEEGDADFRARMFSPGLGTEEDPATGAAAAA
HHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
FPCVLLDAENRVDGHHKVRIDQGFEMGRPSRVDLGFTVKGGQVLDATIGGSAVVITEGVL
CEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEEECCCCEEEEECCEE
HI
CC
>Mature Secondary Structure 
PRRFVTLDVFTSRPFGGNPLAVVLDAQGLDDAAMQQISREFNVSETVFVLPPKNPANRA
CCEEEEEEEEECCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCE
RIRIFSVAHEMPFAGHPTVGAAVLLALEDKLVKGTLKIEEPIGTVTCEVTTQSAGQGAGS
EEEEEEEECCCCCCCCCCHHHEEEEEEHHHHEEEEEEEECCCCEEEEEEEECCCCCCCCC
RKGVAVFTAPRKGELEEVDISRAACAEALNLDESDIGFDAHRPVVASAGVPFLFVPLANL
CCCEEEEECCCCCCCHHHCCHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEEEEHHHH
TALARARPDEAAFINSLGGFGEALYLYTLDEEGDADFRARMFSPGLGTEEDPATGAAAAA
HHHHHCCCCHHHHHHHCCCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCHHHH
FPCVLLDAENRVDGHHKVRIDQGFEMGRPSRVDLGFTVKGGQVLDATIGGSAVVITEGVL
CEEEEEECCCCCCCCEEEEEECCCCCCCCCEEEEEEEECCCEEEEEECCCCEEEEECCEE
HI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]