| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is phnL [H]
Identifier: 154245259
GI number: 154245259
Start: 1506602
End: 1507330
Strand: Reverse
Name: phnL [H]
Synonym: Xaut_1311
Alternate gene names: 154245259
Gene position: 1507330-1506602 (Counterclockwise)
Preceding gene: 154245260
Following gene: 154245258
Centisome position: 28.39
GC content: 70.51
Gene sequence:
>729_bases ATGACTGCGGCTCAAGGGAGTACGGCCTTGCCCCAAGACACCCGCCTCCTCGCCGTCGAAAACCTCGGCAAGAGCTTCAC CCTGCACCTGCAGGGCGGCCTCAGCCTGCCTGTGGTCTCCGCCGTCTCCTTCGCCGTCCATGCCGGGGAGTGCGTGGCGC TGGGCGGGCCGTCGGGGGCGGGGAAAAGCTCCATCCTCAAGATGGTCTATGGCAATTACCGGGTGGATCAGGGCTCCGTG CAGGTGGCCGATGCCGGCGCGCTGGTGGAGGTGGCAGGCGCCGACCCGCGCCTGATGCTGCGGCTGCGGCGCGCGCGCAT CGGCTATGTCAGCCAGTTCCTGCGCGTGATCCCGCGCGTGTCGGCCCTCGACGTGGTGGCAGCGCCCTTGCGCGCGGAAG GCATGGACGCGGAAACCGCCAAGGCACGCGCTGGTGCGCTGCTGGCCCGGCTCAACCTGCCGGAGCGGCTGTGGGGCCTG CCGCCCGCCACCTTCTCCGGCGGTGAGCAGCAGCGGGTGAACGTGGCGCGCGGCTTCATCGGCACCCAGCCCCTGCTGCT GCTGGACGAGCCCACCGCATCGCTGGACGCCGCCAACCGGGCGGTGGTGATCGACCTCATCCATGAAAAGAAGGCGGCCG GCTGCGGCCTGCTCGGCATCTTCCACGATGCCGAGACCCGCGACGCCGTCGCCGACCGGGTGGTGGATGTCACCCGCTTT TCCGCCTGA
Upstream 100 bases:
>100_bases ATGGCCGGGCTTGTCCCTTGCATCCACGCCCGGTGACCGGGCACAGCCTTCCGAGCGTTGCGCCGACGGCACGGCGTGGA TGCCCGGGACAAGGCCGGGC
Downstream 100 bases:
>100_bases CGCAGGATTGAAGACATGACCGAACAGGTGTTCGCCAATGCCCGCCTCGTCCTCGCCGACGAGATCGTCACCGGCCACCT CACGGTGCGCGACGGCCGCA
Product: phosphonate C-P lyase system protein PhnL
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 242; Mature: 241
Protein sequence:
>242_residues MTAAQGSTALPQDTRLLAVENLGKSFTLHLQGGLSLPVVSAVSFAVHAGECVALGGPSGAGKSSILKMVYGNYRVDQGSV QVADAGALVEVAGADPRLMLRLRRARIGYVSQFLRVIPRVSALDVVAAPLRAEGMDAETAKARAGALLARLNLPERLWGL PPATFSGGEQQRVNVARGFIGTQPLLLLDEPTASLDAANRAVVIDLIHEKKAAGCGLLGIFHDAETRDAVADRVVDVTRF SA
Sequences:
>Translated_242_residues MTAAQGSTALPQDTRLLAVENLGKSFTLHLQGGLSLPVVSAVSFAVHAGECVALGGPSGAGKSSILKMVYGNYRVDQGSV QVADAGALVEVAGADPRLMLRLRRARIGYVSQFLRVIPRVSALDVVAAPLRAEGMDAETAKARAGALLARLNLPERLWGL PPATFSGGEQQRVNVARGFIGTQPLLLLDEPTASLDAANRAVVIDLIHEKKAAGCGLLGIFHDAETRDAVADRVVDVTRF SA >Mature_241_residues TAAQGSTALPQDTRLLAVENLGKSFTLHLQGGLSLPVVSAVSFAVHAGECVALGGPSGAGKSSILKMVYGNYRVDQGSVQ VADAGALVEVAGADPRLMLRLRRARIGYVSQFLRVIPRVSALDVVAAPLRAEGMDAETAKARAGALLARLNLPERLWGLP PATFSGGEQQRVNVARGFIGTQPLLLLDEPTASLDAANRAVVIDLIHEKKAAGCGLLGIFHDAETRDAVADRVVDVTRFS A
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4778
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI105990541, Length=184, Percent_Identity=29.8913043478261, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI31657092, Length=220, Percent_Identity=26.8181818181818, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI45446740, Length=222, Percent_Identity=25.6756756756757, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI47078218, Length=222, Percent_Identity=25.6756756756757, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI9955963, Length=165, Percent_Identity=33.9393939393939, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI42741659, Length=170, Percent_Identity=31.1764705882353, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI42490749, Length=170, Percent_Identity=30.5882352941176, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI150417984, Length=221, Percent_Identity=25.3393665158371, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI116734710, Length=218, Percent_Identity=25.2293577981651, Blast_Score=65, Evalue=7e-11, Organism=Escherichia coli, GI1790534, Length=219, Percent_Identity=53.4246575342466, Blast_Score=246, Evalue=1e-66, Organism=Escherichia coli, GI1787105, Length=231, Percent_Identity=31.1688311688312, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1786703, Length=210, Percent_Identity=35.7142857142857, Blast_Score=98, Evalue=4e-22, Organism=Escherichia coli, GI1787029, Length=203, Percent_Identity=31.0344827586207, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=32.2274881516588, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1788225, Length=220, Percent_Identity=29.5454545454545, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1789672, Length=225, Percent_Identity=29.3333333333333, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787089, Length=188, Percent_Identity=33.5106382978723, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1787500, Length=231, Percent_Identity=28.5714285714286, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1790544, Length=235, Percent_Identity=29.3617021276596, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786872, Length=181, Percent_Identity=33.1491712707182, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789873, Length=185, Percent_Identity=32.4324324324324, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=30.6666666666667, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1786398, Length=220, Percent_Identity=28.6363636363636, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1788761, Length=229, Percent_Identity=31.4410480349345, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1788644, Length=211, Percent_Identity=30.3317535545024, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1788165, Length=237, Percent_Identity=28.6919831223629, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI48995001, Length=230, Percent_Identity=28.2608695652174, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789991, Length=226, Percent_Identity=27.4336283185841, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1789962, Length=205, Percent_Identity=26.8292682926829, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1788506, Length=206, Percent_Identity=29.126213592233, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1787712, Length=197, Percent_Identity=28.4263959390863, Blast_Score=74, Evalue=9e-15, Organism=Escherichia coli, GI1787370, Length=199, Percent_Identity=27.6381909547739, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790467, Length=199, Percent_Identity=27.6381909547739, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI48994997, Length=203, Percent_Identity=32.512315270936, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI145693107, Length=234, Percent_Identity=30.7692307692308, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786698, Length=231, Percent_Identity=27.2727272727273, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786563, Length=204, Percent_Identity=29.9019607843137, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=34.1708542713568, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI87081709, Length=203, Percent_Identity=30.0492610837438, Blast_Score=71, Evalue=8e-14, Organism=Escherichia coli, GI1789032, Length=237, Percent_Identity=28.2700421940928, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87081791, Length=230, Percent_Identity=27.8260869565217, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788450, Length=200, Percent_Identity=29.5, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790190, Length=228, Percent_Identity=30.7017543859649, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87082267, Length=199, Percent_Identity=28.643216080402, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI1789891, Length=200, Percent_Identity=29, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789751, Length=226, Percent_Identity=26.9911504424779, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786253, Length=196, Percent_Identity=30.1020408163265, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1788210, Length=231, Percent_Identity=25.974025974026, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787759, Length=210, Percent_Identity=28.0952380952381, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87081782, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787758, Length=199, Percent_Identity=25.1256281407035, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787792, Length=199, Percent_Identity=28.1407035175879, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788472, Length=226, Percent_Identity=24.7787610619469, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788897, Length=190, Percent_Identity=27.8947368421053, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI25146777, Length=180, Percent_Identity=31.1111111111111, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI115533608, Length=242, Percent_Identity=24.7933884297521, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI212646699, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI71996809, Length=178, Percent_Identity=29.7752808988764, Blast_Score=69, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193211015, Length=178, Percent_Identity=29.7752808988764, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=178, Percent_Identity=29.7752808988764, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17565586, Length=196, Percent_Identity=25, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17567265, Length=185, Percent_Identity=29.7297297297297, Blast_Score=66, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6323217, Length=199, Percent_Identity=29.1457286432161, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI24666092, Length=222, Percent_Identity=25.6756756756757, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI21357907, Length=165, Percent_Identity=35.1515151515151, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI85726357, Length=196, Percent_Identity=29.5918367346939, Blast_Score=67, Evalue=8e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012701 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 25327; Mature: 25196
Theoretical pI: Translated: 8.74; Mature: 8.74
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAAQGSTALPQDTRLLAVENLGKSFTLHLQGGLSLPVVSAVSFAVHAGECVALGGPSGA CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCC GKSSILKMVYGNYRVDQGSVQVADAGALVEVAGADPRLMLRLRRARIGYVSQFLRVIPRV CHHHHHHHHHCCEEECCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC SALDVVAAPLRAEGMDAETAKARAGALLARLNLPERLWGLPPATFSGGEQQRVNVARGFI HHHHHHHCCHHCCCCCCHHHHHHHHHHHEECCCCHHHHCCCCCCCCCCCHHHHHHHHCCC GTQPLLLLDEPTASLDAANRAVVIDLIHEKKAAGCGLLGIFHDAETRDAVADRVVDVTRF CCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHC SA CC >Mature Secondary Structure TAAQGSTALPQDTRLLAVENLGKSFTLHLQGGLSLPVVSAVSFAVHAGECVALGGPSGA CCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCC GKSSILKMVYGNYRVDQGSVQVADAGALVEVAGADPRLMLRLRRARIGYVSQFLRVIPRV CHHHHHHHHHCCEEECCCCEEEECCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCC SALDVVAAPLRAEGMDAETAKARAGALLARLNLPERLWGLPPATFSGGEQQRVNVARGFI HHHHHHHCCHHCCCCCCHHHHHHHHHHHEECCCCHHHHCCCCCCCCCCCHHHHHHHHCCC GTQPLLLLDEPTASLDAANRAVVIDLIHEKKAAGCGLLGIFHDAETRDAVADRVVDVTRF CCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHC SA CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]