| Definition | Xanthobacter autotrophicus Py2 chromosome, complete genome. |
|---|---|
| Accession | NC_009720 |
| Length | 5,308,934 |
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The map label for this gene is phnK
Identifier: 154245260
GI number: 154245260
Start: 1507507
End: 1508304
Strand: Reverse
Name: phnK
Synonym: Xaut_1312
Alternate gene names: 154245260
Gene position: 1508304-1507507 (Counterclockwise)
Preceding gene: 154245261
Following gene: 154245259
Centisome position: 28.41
GC content: 69.17
Gene sequence:
>798_bases ATGAGCCAGGAGATGATCTCGCCCCCCGACGCGCCTCTCCTCGTCGCCGAGGGACTTGAGAAATATTACGGTCCCCGCCT CGGCTGCCGCGACGTGGACCTCACCCTGCACGCGGGCGAGGTACTTGCCATCGTGGGAGAATCCGGCTCGGGCAAGTCCA CACTGCTGGGCCTGCTCTCCACCGAGCTGGCCCCCAGCGCCGGCCGCGTGTCCTACCGCATGCGCGACGGGGAGATGCGC GACCTCGCGGCGCTGTCGGAGGCCGAGCGGCGCCTTTTGCTGCGCACCGACTGGGGCTTCGTGCGCCAACATGCGGAACA GGGCCTGCGCATGGCGGTCTCGGCCGGCGGCAATGTGGGCGAGCGGCTCATGGCGGTGGGCTGGCGCCACTACGGCAACA TCCGGCAGGAGGCTGCCGACTGGCTCGCCCGCGTGGAGATCGCCACCGAGCGCATGGACGACGACCCGCGCACCTTCTCC GGCGGCATGCGCCAGCGGCTGCAGATCGCGCGCAACCTCGTCACCCGCCCGCGCCTCGTGTTCATGGACGAGCCCACGAG CGGCCTCGACGTGTCGGTGCAGGCGCGGCTTCTGGACCTCATCCGCCAGTTGGTGGAGGAATTCGGGCTCGCGGTGGTCA TCGTCACCCATGACCTTTCGGTGGCGCGGCTCCTGTCCCACCGCATCATGGTAATGAAATCCGGCCGCGTGATCGAACAG GGACTCACCGACCAGGTGCTCGACGACCCGCGCGAGCCCTACACCCAGCTCCTCGTCTCCTCGGTGCTCGCCGCATGA
Upstream 100 bases:
>100_bases GCGGCCGCATGTTCGTTTGCTCCGACACAGACCATTGCGCCACCCGGCAGGCCGAAGGCCACACCGGCTCCATGAGCGCG CCCTATGGGGAGGGCCAGCC
Downstream 100 bases:
>100_bases TGACCGATCCGTCACGCACCCCGCCCGGCGATCCGACGCCATCGAGGGGAAGGCATCGCGAAGCAGAAGCGTCGTCATGG CCGGGCTTGTCCCTTGCATC
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 264
Protein sequence:
>265_residues MSQEMISPPDAPLLVAEGLEKYYGPRLGCRDVDLTLHAGEVLAIVGESGSGKSTLLGLLSTELAPSAGRVSYRMRDGEMR DLAALSEAERRLLLRTDWGFVRQHAEQGLRMAVSAGGNVGERLMAVGWRHYGNIRQEAADWLARVEIATERMDDDPRTFS GGMRQRLQIARNLVTRPRLVFMDEPTSGLDVSVQARLLDLIRQLVEEFGLAVVIVTHDLSVARLLSHRIMVMKSGRVIEQ GLTDQVLDDPREPYTQLLVSSVLAA
Sequences:
>Translated_265_residues MSQEMISPPDAPLLVAEGLEKYYGPRLGCRDVDLTLHAGEVLAIVGESGSGKSTLLGLLSTELAPSAGRVSYRMRDGEMR DLAALSEAERRLLLRTDWGFVRQHAEQGLRMAVSAGGNVGERLMAVGWRHYGNIRQEAADWLARVEIATERMDDDPRTFS GGMRQRLQIARNLVTRPRLVFMDEPTSGLDVSVQARLLDLIRQLVEEFGLAVVIVTHDLSVARLLSHRIMVMKSGRVIEQ GLTDQVLDDPREPYTQLLVSSVLAA >Mature_264_residues SQEMISPPDAPLLVAEGLEKYYGPRLGCRDVDLTLHAGEVLAIVGESGSGKSTLLGLLSTELAPSAGRVSYRMRDGEMRD LAALSEAERRLLLRTDWGFVRQHAEQGLRMAVSAGGNVGERLMAVGWRHYGNIRQEAADWLARVEIATERMDDDPRTFSG GMRQRLQIARNLVTRPRLVFMDEPTSGLDVSVQARLLDLIRQLVEEFGLAVVIVTHDLSVARLLSHRIMVMKSGRVIEQG LTDQVLDDPREPYTQLLVSSVLAA
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=240, Percent_Identity=28.3333333333333, Blast_Score=82, Evalue=7e-16, Organism=Homo sapiens, GI31657092, Length=227, Percent_Identity=25.5506607929515, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI45446740, Length=235, Percent_Identity=26.8085106382979, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI47078218, Length=235, Percent_Identity=26.8085106382979, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI27477115, Length=239, Percent_Identity=24.6861924686192, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI9955968, Length=222, Percent_Identity=28.8288288288288, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI9955966, Length=222, Percent_Identity=28.8288288288288, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI45243524, Length=222, Percent_Identity=28.8288288288288, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI27436953, Length=203, Percent_Identity=24.6305418719212, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27262624, Length=244, Percent_Identity=25, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27262626, Length=244, Percent_Identity=25, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI148612853, Length=235, Percent_Identity=25.9574468085106, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI48994997, Length=254, Percent_Identity=65.3543307086614, Blast_Score=316, Evalue=9e-88, Organism=Escherichia coli, GI1789962, Length=261, Percent_Identity=37.9310344827586, Blast_Score=155, Evalue=4e-39, Organism=Escherichia coli, GI1789963, Length=260, Percent_Identity=33.8461538461538, Blast_Score=141, Evalue=5e-35, Organism=Escherichia coli, GI1788506, Length=244, Percent_Identity=40.1639344262295, Blast_Score=138, Evalue=4e-34, Organism=Escherichia coli, GI1787758, Length=234, Percent_Identity=39.3162393162393, Blast_Score=134, Evalue=8e-33, Organism=Escherichia coli, GI48994883, Length=244, Percent_Identity=36.8852459016393, Blast_Score=133, Evalue=2e-32, Organism=Escherichia coli, GI1787500, Length=252, Percent_Identity=32.1428571428571, Blast_Score=131, Evalue=5e-32, Organism=Escherichia coli, GI145693107, Length=244, Percent_Identity=34.4262295081967, Blast_Score=127, Evalue=5e-31, Organism=Escherichia coli, GI1788225, Length=248, Percent_Identity=34.6774193548387, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI1787759, Length=233, Percent_Identity=36.0515021459227, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789672, Length=266, Percent_Identity=30.0751879699248, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789891, Length=214, Percent_Identity=35.0467289719626, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1789032, Length=260, Percent_Identity=31.5384615384615, Blast_Score=111, Evalue=5e-26, Organism=Escherichia coli, GI87081791, Length=266, Percent_Identity=30.0751879699248, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI1786398, Length=234, Percent_Identity=29.4871794871795, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1787029, Length=238, Percent_Identity=31.5126050420168, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1787089, Length=231, Percent_Identity=32.034632034632, Blast_Score=104, Evalue=5e-24, Organism=Escherichia coli, GI87081834, Length=216, Percent_Identity=38.4259259259259, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1788644, Length=253, Percent_Identity=32.8063241106719, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787370, Length=259, Percent_Identity=27.7992277992278, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787548, Length=242, Percent_Identity=27.6859504132231, Blast_Score=100, Evalue=1e-22, Organism=Escherichia coli, GI1788761, Length=245, Percent_Identity=30.2040816326531, Blast_Score=98, Evalue=5e-22, Organism=Escherichia coli, GI1789890, Length=237, Percent_Identity=32.0675105485232, Blast_Score=97, Evalue=8e-22, Organism=Escherichia coli, GI1786319, Length=224, Percent_Identity=29.9107142857143, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=27.5720164609054, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786872, Length=253, Percent_Identity=29.2490118577075, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081709, Length=242, Percent_Identity=28.9256198347107, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787547, Length=234, Percent_Identity=26.4957264957265, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1787164, Length=241, Percent_Identity=32.3651452282158, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1790162, Length=248, Percent_Identity=30.241935483871, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790190, Length=227, Percent_Identity=27.7533039647577, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790467, Length=245, Percent_Identity=27.7551020408163, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1789864, Length=253, Percent_Identity=26.4822134387352, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786803, Length=237, Percent_Identity=30.379746835443, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87082268, Length=245, Percent_Identity=28.5714285714286, Blast_Score=84, Evalue=6e-18, Organism=Escherichia coli, GI1786345, Length=223, Percent_Identity=30.0448430493274, Blast_Score=84, Evalue=7e-18, Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=30.0925925925926, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1787105, Length=218, Percent_Identity=32.1100917431193, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787712, Length=238, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1787792, Length=223, Percent_Identity=28.6995515695067, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI1786703, Length=191, Percent_Identity=35.6020942408377, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790544, Length=258, Percent_Identity=28.6821705426357, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790739, Length=242, Percent_Identity=32.6446280991736, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1786563, Length=235, Percent_Identity=28.936170212766, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1788450, Length=238, Percent_Identity=26.4705882352941, Blast_Score=80, Evalue=9e-17, Organism=Escherichia coli, GI1789873, Length=221, Percent_Identity=30.316742081448, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788165, Length=210, Percent_Identity=30, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1789991, Length=232, Percent_Identity=28.448275862069, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1790534, Length=215, Percent_Identity=32.093023255814, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1788210, Length=242, Percent_Identity=28.5123966942149, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1786698, Length=212, Percent_Identity=28.3018867924528, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1789751, Length=250, Percent_Identity=28.4, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=27.4336283185841, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789593, Length=244, Percent_Identity=28.2786885245902, Blast_Score=74, Evalue=7e-15, Organism=Escherichia coli, GI1787112, Length=224, Percent_Identity=31.25, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1788897, Length=239, Percent_Identity=29.2887029288703, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788053, Length=195, Percent_Identity=30.7692307692308, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI48994943, Length=257, Percent_Identity=24.5136186770428, Blast_Score=68, Evalue=7e-13, Organism=Escherichia coli, GI1787182, Length=266, Percent_Identity=24.812030075188, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082267, Length=242, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786981, Length=267, Percent_Identity=28.4644194756554, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI193202349, Length=227, Percent_Identity=30.8370044052863, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI193208177, Length=246, Percent_Identity=27.6422764227642, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI115533608, Length=206, Percent_Identity=26.6990291262136, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71984940, Length=220, Percent_Identity=29.5454545454545, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17565586, Length=220, Percent_Identity=27.2727272727273, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115533592, Length=249, Percent_Identity=26.5060240963855, Blast_Score=67, Evalue=7e-12, Organism=Caenorhabditis elegans, GI17558664, Length=227, Percent_Identity=26.8722466960352, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17552010, Length=221, Percent_Identity=27.1493212669683, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569145, Length=244, Percent_Identity=27.0491803278689, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6320874, Length=196, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6324985, Length=240, Percent_Identity=25.8333333333333, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007184, Length=230, Percent_Identity=27.3913043478261, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI221500365, Length=230, Percent_Identity=27.3913043478261, Blast_Score=82, Evalue=3e-16, Organism=Drosophila melanogaster, GI24643674, Length=225, Percent_Identity=26.2222222222222, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24581191, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24581189, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24581193, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI24581195, Length=208, Percent_Identity=29.3269230769231, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28574150, Length=211, Percent_Identity=24.6445497630332, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007328, Length=211, Percent_Identity=24.6445497630332, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI28574744, Length=188, Percent_Identity=28.7234042553192, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI281363262, Length=226, Percent_Identity=30.9734513274336, Blast_Score=69, Evalue=5e-12, Organism=Drosophila melanogaster, GI24653245, Length=236, Percent_Identity=31.7796610169492, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI23397593, Length=246, Percent_Identity=28.0487804878049, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 29315; Mature: 29184
Theoretical pI: Translated: 5.72; Mature: 5.72
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQEMISPPDAPLLVAEGLEKYYGPRLGCRDVDLTLHAGEVLAIVGESGSGKSTLLGLLS CCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEECCCCCHHHHHHHHH TELAPSAGRVSYRMRDGEMRDLAALSEAERRLLLRTDWGFVRQHAEQGLRMAVSAGGNVG HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHEEEECCCCCHH ERLMAVGWRHYGNIRQEAADWLARVEIATERMDDDPRTFSGGMRQRLQIARNLVTRPRLV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE FMDEPTSGLDVSVQARLLDLIRQLVEEFGLAVVIVTHDLSVARLLSHRIMVMKSGRVIEQ EEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHEEECCCHHHH GLTDQVLDDPREPYTQLLVSSVLAA CCHHHHHCCCCCHHHHHHHHHHHCC >Mature Secondary Structure SQEMISPPDAPLLVAEGLEKYYGPRLGCRDVDLTLHAGEVLAIVGESGSGKSTLLGLLS CCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEEECCEEEEEEECCCCCHHHHHHHHH TELAPSAGRVSYRMRDGEMRDLAALSEAERRLLLRTDWGFVRQHAEQGLRMAVSAGGNVG HHCCCCCCCEEEEECCCCHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHEEEECCCCCHH ERLMAVGWRHYGNIRQEAADWLARVEIATERMDDDPRTFSGGMRQRLQIARNLVTRPRLV HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEE FMDEPTSGLDVSVQARLLDLIRQLVEEFGLAVVIVTHDLSVARLLSHRIMVMKSGRVIEQ EEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHEEECCCHHHH GLTDQVLDDPREPYTQLLVSSVLAA CCHHHHHCCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]