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The map label for this gene is rhaR [C]

Identifier: 154245227

GI number: 154245227

Start: 1472259

End: 1473179

Strand: Reverse

Name: rhaR [C]

Synonym: Xaut_1279

Alternate gene names: 154245227

Gene position: 1473179-1472259 (Counterclockwise)

Preceding gene: 154245230

Following gene: 154245225

Centisome position: 27.75

GC content: 71.23

Gene sequence:

>921_bases
ATGAACGGTGCTCAGTCACACGCGACGGAACCTCAGGACGCCGCACGCCACGCCTCGGGACGCGACAGCCTCGGCTGCGC
GCTGGATGCGCTCTGCGAGGGTCAGGAACTAAGCGGTAACGGCTTCGTGATCTACCGCAAGTCCCATGACGGCAGCGAAC
TGCGGCAGGTGGAAACACCGCCGAGCGACCGGGGCGTGCTGGTCGGTCTGTCCCTCTCGGGCGGCCACCGGCGGCGCATC
TTCACCGGCAACCGCTCGGCCACTTACGATTTCGCGGCGGACAGCTGCTACATCCGCCCGTTCGCCGACGACTACCGGGC
CGACATCGAGACCGGGTTCGAATTCCTGCTGCTGGAGGTCTCCCAGGCGGCGCTCCACCGCACCTGCGCCGAAAGCGGCG
TGGCGCTCGCCGACGCGCTTTCCACCACGCCCGGGGCGAGCGACCCGGTGCTCGCCCATCTCGGCCGGGCCCTGTTGCCG
GCCCTCGCCCATGCGGCGAGCGCCAGCGCGCTGTTCGTGGAGCAGGTGGTGTGCGCCATGCAGACGCATCTGGTCGCCCG
CTATCACGGCGCTACCGCGCGGGCCGCGCGGGGTGGCGGCCTGTCCGACCTGCAGCTGCGGCGCGCCCAGGAACTTCTGG
CGGCGGGCATGGACGGCACGGTGCTGATCGCCGACATTGCCGCCGCCTGCAACGTGTCGCGCAGCTATTTTATCCGCGCC
TTCCGGCAGGCCACGGGCGCGACGCCCTACCAGTGGCTGCTCGCCCGGCGGGTGGAGCAGGCCCGCGCGCTGCTCACCCG
ATCGGCCATGCCCCTGGCGGACGTGGCCATCCAGTGCGGCTTTTCCGACCAGAGCCACATGACGCGCACCTTCGCCCGCC
TCACCGGATCGACGCCCGGAGCCTGGCGGCGCAGCCGCTGA

Upstream 100 bases:

>100_bases
CGATGACCGCGACCGCCAGGCGCGAGGCCCCTGGCGCGTGGTCTGGATGCACCGCAGCGAAGCCCTTGCCATTGAGACCC
ACGGCGGGTCAGATATCCGC

Downstream 100 bases:

>100_bases
GAGCGGGTTGGGACTTCAAAGGTAAAAGACCCCCGGCGCCCTATGTCGTGCCCGGCCATGGCGGCACTAAAGCGCTTGCG
AGGACTGCAAGCAGCACCCC

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: Transcriptional Regulator AraC Family; Transcriptional Regulator; Helix-Turn-Helix Domain-Containing Protein; Transcriptional Regulator AraC Family Protein; AraC Family Transcription Regulator; Transcriptional Regulator Protein; AraC Family Regulatory Protein; AraC-Family Transcriptional Regulator; Helix-Turn-Helix- Domain Containing Protein AraC Type; Transcriptional Regulator Protein AraC Family; Transcriptional Regulatory Protein; AraC Family Transcription Regulator Protein; PAS Fold-4 Domain Protein; PAS Sensor Protein; AraC Family Regulator; Transcriptional Activator; AraC/XylS Family Transcription Factor; Transcription Regulator Protein; AraC Type Helix-Turn-Helix- Domain-Containing Protein; L-Rhamnose Operon Transcriptional Activator RhaR; Helix-Turn-Helix AraC Type; Transcription Regulator; Xyls/AraC-Type Transcriptional Activator

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNGAQSHATEPQDAARHASGRDSLGCALDALCEGQELSGNGFVIYRKSHDGSELRQVETPPSDRGVLVGLSLSGGHRRRI
FTGNRSATYDFAADSCYIRPFADDYRADIETGFEFLLLEVSQAALHRTCAESGVALADALSTTPGASDPVLAHLGRALLP
ALAHAASASALFVEQVVCAMQTHLVARYHGATARAARGGGLSDLQLRRAQELLAAGMDGTVLIADIAAACNVSRSYFIRA
FRQATGATPYQWLLARRVEQARALLTRSAMPLADVAIQCGFSDQSHMTRTFARLTGSTPGAWRRSR

Sequences:

>Translated_306_residues
MNGAQSHATEPQDAARHASGRDSLGCALDALCEGQELSGNGFVIYRKSHDGSELRQVETPPSDRGVLVGLSLSGGHRRRI
FTGNRSATYDFAADSCYIRPFADDYRADIETGFEFLLLEVSQAALHRTCAESGVALADALSTTPGASDPVLAHLGRALLP
ALAHAASASALFVEQVVCAMQTHLVARYHGATARAARGGGLSDLQLRRAQELLAAGMDGTVLIADIAAACNVSRSYFIRA
FRQATGATPYQWLLARRVEQARALLTRSAMPLADVAIQCGFSDQSHMTRTFARLTGSTPGAWRRSR
>Mature_306_residues
MNGAQSHATEPQDAARHASGRDSLGCALDALCEGQELSGNGFVIYRKSHDGSELRQVETPPSDRGVLVGLSLSGGHRRRI
FTGNRSATYDFAADSCYIRPFADDYRADIETGFEFLLLEVSQAALHRTCAESGVALADALSTTPGASDPVLAHLGRALLP
ALAHAASASALFVEQVVCAMQTHLVARYHGATARAARGGGLSDLQLRRAQELLAAGMDGTVLIADIAAACNVSRSYFIRA
FRQATGATPYQWLLARRVEQARALLTRSAMPLADVAIQCGFSDQSHMTRTFARLTGSTPGAWRRSR

Specific function: Activator Of The L-Rhamnose Operon. Rhar Putatively Autoregulates Its Synthesis. [C]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32674; Mature: 32674

Theoretical pI: Translated: 8.09; Mature: 8.09

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNGAQSHATEPQDAARHASGRDSLGCALDALCEGQELSGNGFVIYRKSHDGSELRQVETP
CCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCEECCCEEEEEEECCCCHHHHCCCCC
PSDRGVLVGLSLSGGHRRRIFTGNRSATYDFAADSCYIRPFADDYRADIETGFEFLLLEV
CCCCCEEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCHHHHHHHHHHCHHHHHHHH
SQAALHRTCAESGVALADALSTTPGASDPVLAHLGRALLPALAHAASASALFVEQVVCAM
HHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTHLVARYHGATARAARGGGLSDLQLRRAQELLAAGMDGTVLIADIAAACNVSRSYFIRA
HHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH
FRQATGATPYQWLLARRVEQARALLTRSAMPLADVAIQCGFSDQSHMTRTFARLTGSTPG
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCHHHHHHHHHHHCCCCCC
AWRRSR
CCCCCC
>Mature Secondary Structure
MNGAQSHATEPQDAARHASGRDSLGCALDALCEGQELSGNGFVIYRKSHDGSELRQVETP
CCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHCCCCEECCCEEEEEEECCCCHHHHCCCCC
PSDRGVLVGLSLSGGHRRRIFTGNRSATYDFAADSCYIRPFADDYRADIETGFEFLLLEV
CCCCCEEEEEEECCCCCEEEEECCCCCEEEECCCCEEECCCHHHHHHHHHHCHHHHHHHH
SQAALHRTCAESGVALADALSTTPGASDPVLAHLGRALLPALAHAASASALFVEQVVCAM
HHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QTHLVARYHGATARAARGGGLSDLQLRRAQELLAAGMDGTVLIADIAAACNVSRSYFIRA
HHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHH
FRQATGATPYQWLLARRVEQARALLTRSAMPLADVAIQCGFSDQSHMTRTFARLTGSTPG
HHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHEECCCCCHHHHHHHHHHHCCCCCC
AWRRSR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA