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The map label for this gene is cydB [H]

Identifier: 154245215

GI number: 154245215

Start: 1457004

End: 1458008

Strand: Reverse

Name: cydB [H]

Synonym: Xaut_1267

Alternate gene names: 154245215

Gene position: 1458008-1457004 (Counterclockwise)

Preceding gene: 154245216

Following gene: 154245213

Centisome position: 27.46

GC content: 66.47

Gene sequence:

>1005_bases
ATGGAATGGTATCTCCCCGTCATATGGGGCGGCATCATCGGTGTCGCGGTCATCATGTACGTGGTGCTCGACGGCTTCGA
CCTGGGCATCGGCATCCTGTTTCCGTTCGCCAAGGAAGAGCGCGAGCGCGACACCATGATGAACACGGTGGCGCCGTTCT
GGGACGGCAACGAGACCTGGCTCATCCTCGGCGGCGGCGGCCTGTGGGTCGCCTTCCCCAAGGCCTATGCGGTGGTGATG
CCGGCGCTCTACCTGCCCGTCATCATCATGCTGCTCGCCTTGGTGTTCCGCGGCGTCGCCTTCGAGTTTCGATGGGTCGC
CTTGACCAGCCGGCGCTGGTGGAATGCAGCCTTCGCCGGCGGATCGCTGGTGGCGGCCTTCGCTCAGGGGGTGGTCCTGG
GCGGGCTGGTGCAGGGCATCACCGTGAAGAACGGCGCCTTTGCCGGCGGCCCTCTGGATTGGGCGACGCCGTTTGCCGCC
CTGTGCGGCATCGGCGTGGTGCTGGGCTATGCGCTGCTGGGCTCCACCTGGCTGCTCATCAAGACCGATGGCGTGGTGGC
CGAGCGCGCCCGCGCCCACGCCATTCCCCTGCTTTTGGCGGTGATGGCCATGATGGCGGTGGTCAGCCTGTGGACCCCCA
TCGCGTTCGACCGCATCGCCACCCGCTGGTTCTCGCGGCCCAACATCTTCTTCCTCGCGCCGGTGCCCGTCATCACCGTA
CTGGTCGCCCTGGCGGTGCTGCACTGGCTGAAGTCCGGGCGGGAAATGCTGCCATTCTTCGGCACCGTGGGGCTGTTCGT
GCTCGGCTTCCTGGGCCTTGCCATCTCCACCTTTCCCTATCTGGTGCCGCCAAGCCTCACCGTGTGGCAGACCGCCGCCG
CCGCGCCGAGCCAGATCCTGATGCTGTTCGGCGTCATCTTCCTGCTGCCGGTGGTGCTGGGCTACATCGTGTTCGTCTAC
TGGATCTTCCGCGGCAAGGTCCGCGAGGGCGAGGGCTACCACTGA

Upstream 100 bases:

>100_bases
CGGCCCACCAGCCCCATGGCCGCCGCCCACGGCGAAGGCCAGATGACTCCCGGCACCTGAAACATCGTCCCGTCAACCGA
CGCGTGAGAGGATACAAGCC

Downstream 100 bases:

>100_bases
CCGGCTTGTCCTGAGGACTGCACTGAAGGATCTGCACTGAGGGACGCGCACCCCTCAGTCCGCCTCCTCCAGCTCCCCGG
GGGCTGGAAACAGGCCAAGC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MEWYLPVIWGGIIGVAVIMYVVLDGFDLGIGILFPFAKEERERDTMMNTVAPFWDGNETWLILGGGGLWVAFPKAYAVVM
PALYLPVIIMLLALVFRGVAFEFRWVALTSRRWWNAAFAGGSLVAAFAQGVVLGGLVQGITVKNGAFAGGPLDWATPFAA
LCGIGVVLGYALLGSTWLLIKTDGVVAERARAHAIPLLLAVMAMMAVVSLWTPIAFDRIATRWFSRPNIFFLAPVPVITV
LVALAVLHWLKSGREMLPFFGTVGLFVLGFLGLAISTFPYLVPPSLTVWQTAAAAPSQILMLFGVIFLLPVVLGYIVFVY
WIFRGKVREGEGYH

Sequences:

>Translated_334_residues
MEWYLPVIWGGIIGVAVIMYVVLDGFDLGIGILFPFAKEERERDTMMNTVAPFWDGNETWLILGGGGLWVAFPKAYAVVM
PALYLPVIIMLLALVFRGVAFEFRWVALTSRRWWNAAFAGGSLVAAFAQGVVLGGLVQGITVKNGAFAGGPLDWATPFAA
LCGIGVVLGYALLGSTWLLIKTDGVVAERARAHAIPLLLAVMAMMAVVSLWTPIAFDRIATRWFSRPNIFFLAPVPVITV
LVALAVLHWLKSGREMLPFFGTVGLFVLGFLGLAISTFPYLVPPSLTVWQTAAAAPSQILMLFGVIFLLPVVLGYIVFVY
WIFRGKVREGEGYH
>Mature_334_residues
MEWYLPVIWGGIIGVAVIMYVVLDGFDLGIGILFPFAKEERERDTMMNTVAPFWDGNETWLILGGGGLWVAFPKAYAVVM
PALYLPVIIMLLALVFRGVAFEFRWVALTSRRWWNAAFAGGSLVAAFAQGVVLGGLVQGITVKNGAFAGGPLDWATPFAA
LCGIGVVLGYALLGSTWLLIKTDGVVAERARAHAIPLLLAVMAMMAVVSLWTPIAFDRIATRWFSRPNIFFLAPVPVITV
LVALAVLHWLKSGREMLPFFGTVGLFVLGFLGLAISTFPYLVPPSLTVWQTAAAAPSQILMLFGVIFLLPVVLGYIVFVY
WIFRGKVREGEGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=365, Percent_Identity=27.6712328767123, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1787213, Length=361, Percent_Identity=29.9168975069252, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36458; Mature: 36458

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWYLPVIWGGIIGVAVIMYVVLDGFDLGIGILFPFAKEERERDTMMNTVAPFWDGNETW
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEE
LILGGGGLWVAFPKAYAVVMPALYLPVIIMLLALVFRGVAFEFRWVALTSRRWWNAAFAG
EEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHCC
GSLVAAFAQGVVLGGLVQGITVKNGAFAGGPLDWATPFAALCGIGVVLGYALLGSTWLLI
HHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
KTDGVVAERARAHAIPLLLAVMAMMAVVSLWTPIAFDRIATRWFSRPNIFFLAPVPVITV
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
LVALAVLHWLKSGREMLPFFGTVGLFVLGFLGLAISTFPYLVPPSLTVWQTAAAAPSQIL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
MLFGVIFLLPVVLGYIVFVYWIFRGKVREGEGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MEWYLPVIWGGIIGVAVIMYVVLDGFDLGIGILFPFAKEERERDTMMNTVAPFWDGNETW
CCEEHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCEE
LILGGGGLWVAFPKAYAVVMPALYLPVIIMLLALVFRGVAFEFRWVALTSRRWWNAAFAG
EEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCHHHHHHCC
GSLVAAFAQGVVLGGLVQGITVKNGAFAGGPLDWATPFAALCGIGVVLGYALLGSTWLLI
HHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEE
KTDGVVAERARAHAIPLLLAVMAMMAVVSLWTPIAFDRIATRWFSRPNIFFLAPVPVITV
ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHH
LVALAVLHWLKSGREMLPFFGTVGLFVLGFLGLAISTFPYLVPPSLTVWQTAAAAPSQIL
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHH
MLFGVIFLLPVVLGYIVFVYWIFRGKVREGEGYH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]