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The map label for this gene is cydA [H]

Identifier: 154245216

GI number: 154245216

Start: 1458049

End: 1459443

Strand: Reverse

Name: cydA [H]

Synonym: Xaut_1268

Alternate gene names: 154245216

Gene position: 1459443-1458049 (Counterclockwise)

Preceding gene: 154245219

Following gene: 154245215

Centisome position: 27.49

GC content: 65.81

Gene sequence:

>1395_bases
ATGGATTTCGATCCGGTGACCCTCGCGCGTATTCAGTTCGCCTTCACGGTCTCCTTCCACGTCATCTTCCCGGCCTTCAC
CATCGGGCTTTCCGCCTTCATCGCGACGCTGGAACTGATCTGGCTGAAGACCGGCCGCGACGTGTACCATCGCCTTGCAC
GGTTCTGGACCAAGATCTTCGCCGTGTCCTTCGCCATGGGCGTGGTGTCCGGCATCGTGCTGTCCTACCAGTTCGGCACC
AACTGGAGCCGCTATGCCGAGTTCGTGGGCTCGGTGGTGGCACCGCTCATCGGCTTCGAGGTGCTGACCGCCTTCTTCCT
GGAGGCGACCTTCCTCGGCATCATGCTGTTCGGCTGGAACCGGGTGCCGCCGTGGCTGCATGTGCTGTCGTGCTGCGTGG
TCGCGTTCGGCACCTTCATGTCGGCTTTCTGGATCCTTTCCGCCAACAGCTGGATGCAGACCCCCGCCGGCTTCGAGCTG
CGCGACGGCGTCGCCTACCCGCTGGACTGGCTGAAGATCATCTTCAACCCGAGCTTCCACTGGCGCCTGCCCCACATGCT
GCTGGCGGCCTATCTCACCACCTCGCTGGTGGTTCTGTCGGTGGGCGCGCGCTACCTGCTGGCCGGCAAGTTCCCTGAGG
AATCGCGGGTGATGATGGTGATGGGCATCGGCATGCTCGCCATCGTCGGCCCCATCCAGGCCTTCGTGGGCGACAGCCAC
GGCCTCAACACCGCCCACTACCAGCCGGCCAAGATCGCCGCCGTCGAGGCCCATTGGGACAGCAAGGAGCCGGCGCCCCT
GGTGCTGTTCGCCTGGCCCGACGAGAAGGCGGAGAAGAACCTCTTTGAGATCTCCATCCCGCGCGGCGCCTCGCTGATGA
TCACCCACAGCCTGGACGGCCTGTTCCCGGGACTGAAGGACTTCGCCCCGCAGGACCGACCGCCGGTGCTCGGCCCGTTC
TTCGGTTTCCGCGCCATGGTGGGCGTGGGCGTGGTGATGATCCTCCTCGGCTGGATCGGCGCGTGGCTGATCTACCGGGA
TGAGGAGACCATCACCCGCTGGTATCTGCGCCTGTGTTCCTGGGCTTGGCCACTGGGCTTCATCGCCATCCTGTCGGGCT
GGATCGTTACCGAGCAGGGCCGCCAGCCCTGGGTGGTGGACGGCCTGCTGCGCACCGAGGACGCCATGTCGCCCCTCGCG
GGCTGGACCGTGGCGCTGACACTGGTGCTGTTCCTCATCGTCTACGGCATCATCTTCGCCACCGGCCTCTATTTCATGAA
CCGCCTCATCGTGCGCGGTCCCGGTGGCACGATGATCGAGCCGCCGAGCACCGAGCGGCCCACCAGCCCCATGGCCGCCG
CCCACGGCGAAGGCCAGATGACTCCCGGCACCTGA

Upstream 100 bases:

>100_bases
GCTGTCCGGATCGGATCCAGCCCGTGGCCGGGGTGCCCCCCTGGAGCATGCCGGCGGATCGCCCGGCGGCCTCCTGAGCG
GACGACAAGGAGCGGACCCG

Downstream 100 bases:

>100_bases
AACATCGTCCCGTCAACCGACGCGTGAGAGGATACAAGCCATGGAATGGTATCTCCCCGTCATATGGGGCGGCATCATCG
GTGTCGCGGTCATCATGTAC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 464; Mature: 464

Protein sequence:

>464_residues
MDFDPVTLARIQFAFTVSFHVIFPAFTIGLSAFIATLELIWLKTGRDVYHRLARFWTKIFAVSFAMGVVSGIVLSYQFGT
NWSRYAEFVGSVVAPLIGFEVLTAFFLEATFLGIMLFGWNRVPPWLHVLSCCVVAFGTFMSAFWILSANSWMQTPAGFEL
RDGVAYPLDWLKIIFNPSFHWRLPHMLLAAYLTTSLVVLSVGARYLLAGKFPEESRVMMVMGIGMLAIVGPIQAFVGDSH
GLNTAHYQPAKIAAVEAHWDSKEPAPLVLFAWPDEKAEKNLFEISIPRGASLMITHSLDGLFPGLKDFAPQDRPPVLGPF
FGFRAMVGVGVVMILLGWIGAWLIYRDEETITRWYLRLCSWAWPLGFIAILSGWIVTEQGRQPWVVDGLLRTEDAMSPLA
GWTVALTLVLFLIVYGIIFATGLYFMNRLIVRGPGGTMIEPPSTERPTSPMAAAHGEGQMTPGT

Sequences:

>Translated_464_residues
MDFDPVTLARIQFAFTVSFHVIFPAFTIGLSAFIATLELIWLKTGRDVYHRLARFWTKIFAVSFAMGVVSGIVLSYQFGT
NWSRYAEFVGSVVAPLIGFEVLTAFFLEATFLGIMLFGWNRVPPWLHVLSCCVVAFGTFMSAFWILSANSWMQTPAGFEL
RDGVAYPLDWLKIIFNPSFHWRLPHMLLAAYLTTSLVVLSVGARYLLAGKFPEESRVMMVMGIGMLAIVGPIQAFVGDSH
GLNTAHYQPAKIAAVEAHWDSKEPAPLVLFAWPDEKAEKNLFEISIPRGASLMITHSLDGLFPGLKDFAPQDRPPVLGPF
FGFRAMVGVGVVMILLGWIGAWLIYRDEETITRWYLRLCSWAWPLGFIAILSGWIVTEQGRQPWVVDGLLRTEDAMSPLA
GWTVALTLVLFLIVYGIIFATGLYFMNRLIVRGPGGTMIEPPSTERPTSPMAAAHGEGQMTPGT
>Mature_464_residues
MDFDPVTLARIQFAFTVSFHVIFPAFTIGLSAFIATLELIWLKTGRDVYHRLARFWTKIFAVSFAMGVVSGIVLSYQFGT
NWSRYAEFVGSVVAPLIGFEVLTAFFLEATFLGIMLFGWNRVPPWLHVLSCCVVAFGTFMSAFWILSANSWMQTPAGFEL
RDGVAYPLDWLKIIFNPSFHWRLPHMLLAAYLTTSLVVLSVGARYLLAGKFPEESRVMMVMGIGMLAIVGPIQAFVGDSH
GLNTAHYQPAKIAAVEAHWDSKEPAPLVLFAWPDEKAEKNLFEISIPRGASLMITHSLDGLFPGLKDFAPQDRPPVLGPF
FGFRAMVGVGVVMILLGWIGAWLIYRDEETITRWYLRLCSWAWPLGFIAILSGWIVTEQGRQPWVVDGLLRTEDAMSPLA
GWTVALTLVLFLIVYGIIFATGLYFMNRLIVRGPGGTMIEPPSTERPTSPMAAAHGEGQMTPGT

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=513, Percent_Identity=32.1637426900585, Blast_Score=259, Evalue=2e-70,
Organism=Escherichia coli, GI87081779, Length=502, Percent_Identity=30.0796812749004, Blast_Score=245, Evalue=4e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 51588; Mature: 51588

Theoretical pI: Translated: 6.86; Mature: 6.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFDPVTLARIQFAFTVSFHVIFPAFTIGLSAFIATLELIWLKTGRDVYHRLARFWTKIF
CCCCCHHHHHEEEEHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AVSFAMGVVSGIVLSYQFGTNWSRYAEFVGSVVAPLIGFEVLTAFFLEATFLGIMLFGWN
HHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RVPPWLHVLSCCVVAFGTFMSAFWILSANSWMQTPAGFELRDGVAYPLDWLKIIFNPSFH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCC
WRLPHMLLAAYLTTSLVVLSVGARYLLAGKFPEESRVMMVMGIGMLAIVGPIQAFVGDSH
CCHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCC
GLNTAHYQPAKIAAVEAHWDSKEPAPLVLFAWPDEKAEKNLFEISIPRGASLMITHSLDG
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHCCEEEEECCCCCEEEEEECCHH
LFPGLKDFAPQDRPPVLGPFFGFRAMVGVGVVMILLGWIGAWLIYRDEETITRWYLRLCS
HCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHH
WAWPLGFIAILSGWIVTEQGRQPWVVDGLLRTEDAMSPLAGWTVALTLVLFLIVYGIIFA
HHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLYFMNRLIVRGPGGTMIEPPSTERPTSPMAAAHGEGQMTPGT
HHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC
>Mature Secondary Structure
MDFDPVTLARIQFAFTVSFHVIFPAFTIGLSAFIATLELIWLKTGRDVYHRLARFWTKIF
CCCCCHHHHHEEEEHEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
AVSFAMGVVSGIVLSYQFGTNWSRYAEFVGSVVAPLIGFEVLTAFFLEATFLGIMLFGWN
HHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
RVPPWLHVLSCCVVAFGTFMSAFWILSANSWMQTPAGFELRDGVAYPLDWLKIIFNPSFH
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCCHHHHHHHCCCCCC
WRLPHMLLAAYLTTSLVVLSVGARYLLAGKFPEESRVMMVMGIGMLAIVGPIQAFVGDSH
CCHHHHHHHHHHHHHHHHHHHCCHHEEECCCCCCCCEEEEEHHHHHHHHHHHHHHHCCCC
GLNTAHYQPAKIAAVEAHWDSKEPAPLVLFAWPDEKAEKNLFEISIPRGASLMITHSLDG
CCCCCCCCCCCEEEEEECCCCCCCCCEEEEECCCCHHHCCEEEEECCCCCEEEEEECCHH
LFPGLKDFAPQDRPPVLGPFFGFRAMVGVGVVMILLGWIGAWLIYRDEETITRWYLRLCS
HCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHH
WAWPLGFIAILSGWIVTEQGRQPWVVDGLLRTEDAMSPLAGWTVALTLVLFLIVYGIIFA
HHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGLYFMNRLIVRGPGGTMIEPPSTERPTSPMAAAHGEGQMTPGT
HHHHHHHHHEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]