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The map label for this gene is 154244902

Identifier: 154244902

GI number: 154244902

Start: 1071707

End: 1072246

Strand: Reverse

Name: 154244902

Synonym: Xaut_0952

Alternate gene names: NA

Gene position: 1072246-1071707 (Counterclockwise)

Preceding gene: 154244903

Following gene: 154244900

Centisome position: 20.2

GC content: 67.96

Gene sequence:

>540_bases
GTGTCGGCGCCAAACCCGCCACTGGACGCCCTGATGATCGCCGCCCAGGCTGGCGACGAGGCAGCCTATCGCGCCCTCTT
GAAAGCCTTGGCGGCAACTCTCCGCAGCTATTTCGCGCGCCGGCTCGGCCGCGATGCCTCGGTGGAAGATCTGGTTCAGG
ACACGCTGATCGCCATCCACGAACGCCGCGCCACCTATGATCCGCAGCGGCCGTTCGCGGCCTGGTTCTTCGCCATCGCC
CGCTACAAGCTCATCGACCACCTCAGGGCGACGCACCGGAACGCGTCGAGCGTTGTGGACGAGATCGACGATATCGCCGG
AGCGGACGAGGAGGCGCCTGCCAGCGCGCGGCTCGACCTGGAGCGTCTCCTGGACGGCCTGCCCCAGCGCTCCCGCGACA
TCGTGCGCACGGTAAAGATCGAGGGGCAGTCGGTGGCCGAAGTCTCGCTGCGCTCGGGCCTGTCGCCCACCGCGATCCGC
GTGCTCCTGCACCGCGCGGTCAAGACCATGTCGGCCAAGGTGGGCAATTCCCGTCAATGA

Upstream 100 bases:

>100_bases
GCGCTGGGCCATTGGATCGTTGGGCCGGGCGCGACGGTCTCCGGCGGCCCATTGGCGGCAGCGGTATTGGTCGCGCGCGG
ATCTGAATGCGGAGATGGAC

Downstream 100 bases:

>100_bases
TCCGATGCTGGCCGGCTGCGGCGCGAATGCGACCGGCGGCACCGCCTGTCATTCCACCTGTCCTGCGGCACTCCCCTGCT
CCACCAGCCAGTGCTCGAGC

Product: ECF subfamily RNA polymerase sigma-24 factor

Products: NA

Alternate protein names: RNA Polymerase Sigma-24 Subunit ECF Subfamily; ECF Subfamily RNA Polymerase Sigma-24 Factor; Sigma-; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma Factor Protein; RNA Polymerase Sigma-E Factor Protein; ECF-Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma Q Factor; Extracytoplasmic Function AlteRNAtive Sigma Factor; RNA Polymerase ECF-Subfamily Sigma Factor; RNA Polymerase Sigma-24 Subunit ECF Subfamily Protein; RNA Polymerase Sigma-24 Factor; ECF-Type Sigma Factor; RNA Polymerase Sigma Factor NccH; RNA Polymerase Sigma Subunit; RNA Polymerase Sigma Factor Sigma-70 Family; ECF Family RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-24 Subunit; Sigma-70 Family RNA Polymerase Sigma Factor

Number of amino acids: Translated: 179; Mature: 178

Protein sequence:

>179_residues
MSAPNPPLDALMIAAQAGDEAAYRALLKALAATLRSYFARRLGRDASVEDLVQDTLIAIHERRATYDPQRPFAAWFFAIA
RYKLIDHLRATHRNASSVVDEIDDIAGADEEAPASARLDLERLLDGLPQRSRDIVRTVKIEGQSVAEVSLRSGLSPTAIR
VLLHRAVKTMSAKVGNSRQ

Sequences:

>Translated_179_residues
MSAPNPPLDALMIAAQAGDEAAYRALLKALAATLRSYFARRLGRDASVEDLVQDTLIAIHERRATYDPQRPFAAWFFAIA
RYKLIDHLRATHRNASSVVDEIDDIAGADEEAPASARLDLERLLDGLPQRSRDIVRTVKIEGQSVAEVSLRSGLSPTAIR
VLLHRAVKTMSAKVGNSRQ
>Mature_178_residues
SAPNPPLDALMIAAQAGDEAAYRALLKALAATLRSYFARRLGRDASVEDLVQDTLIAIHERRATYDPQRPFAAWFFAIAR
YKLIDHLRATHRNASSVVDEIDDIAGADEEAPASARLDLERLLDGLPQRSRDIVRTVKIEGQSVAEVSLRSGLSPTAIRV
LLHRAVKTMSAKVGNSRQ

Specific function: Unknown

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19671; Mature: 19539

Theoretical pI: Translated: 9.52; Mature: 9.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPNPPLDALMIAAQAGDEAAYRALLKALAATLRSYFARRLGRDASVEDLVQDTLIAIH
CCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ERRATYDPQRPFAAWFFAIARYKLIDHLRATHRNASSVVDEIDDIAGADEEAPASARLDL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
ERLLDGLPQRSRDIVRTVKIEGQSVAEVSLRSGLSPTAIRVLLHRAVKTMSAKVGNSRQ
HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SAPNPPLDALMIAAQAGDEAAYRALLKALAATLRSYFARRLGRDASVEDLVQDTLIAIH
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
ERRATYDPQRPFAAWFFAIARYKLIDHLRATHRNASSVVDEIDDIAGADEEAPASARLDL
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
ERLLDGLPQRSRDIVRTVKIEGQSVAEVSLRSGLSPTAIRVLLHRAVKTMSAKVGNSRQ
HHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA