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The map label for this gene is soxD [H]

Identifier: 154244818

GI number: 154244818

Start: 968046

End: 968339

Strand: Reverse

Name: soxD [H]

Synonym: Xaut_0868

Alternate gene names: 154244818

Gene position: 968339-968046 (Counterclockwise)

Preceding gene: 154244819

Following gene: 154244817

Centisome position: 18.24

GC content: 68.71

Gene sequence:

>294_bases
ATGCTCCTCGTTCCCTGCCCCTATTGCGGACCGCGCCCCGAGGTGGAATTCCACTGCGGCGGCGAGGCCCATATCGCCCG
CCCGGCCGACCCCAGCGCCCTCGATGACGCCCGGTGGGCGGACTATCTCTTCGTGCGCACCAGCAACAAGGGCGTGCATG
CCGAGCGCTGGCTGCATTCCCACGGCTGCGGCCGCTGGTTCAACGCCCTGCGCAACACCGTGAGCGACAGCTTCCTCGCC
AGCTACGAGATGGGCCAGCCGCGCCCTGCGCTCCCAACTGAAGGAGGCAAGTGA

Upstream 100 bases:

>100_bases
CCCACCCCATCAACGCCCCCTTCACCCTCGACCGCTTCCGCACCGGCCGCCTCATCGACGAGGCAGCGGCGGCGGCCGTT
GCCCACTGAGGATTCGCACC

Downstream 100 bases:

>100_bases
GATGGCCCAATCCAATCGCCTCCCCACCGGCGGCCGCATCGACCGCGCTCGGCCGCTGGCCTTCACCTTCAACGGCAAGA
CCGTTGAGGGCTTTGCCGGC

Product: sarcosine oxidase delta subunit family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 97; Mature: 97

Protein sequence:

>97_residues
MLLVPCPYCGPRPEVEFHCGGEAHIARPADPSALDDARWADYLFVRTSNKGVHAERWLHSHGCGRWFNALRNTVSDSFLA
SYEMGQPRPALPTEGGK

Sequences:

>Translated_97_residues
MLLVPCPYCGPRPEVEFHCGGEAHIARPADPSALDDARWADYLFVRTSNKGVHAERWLHSHGCGRWFNALRNTVSDSFLA
SYEMGQPRPALPTEGGK
>Mature_97_residues
MLLVPCPYCGPRPEVEFHCGGEAHIARPADPSALDDARWADYLFVRTSNKGVHAERWLHSHGCGRWFNALRNTVSDSFLA
SYEMGQPRPALPTEGGK

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 10780; Mature: 10780

Theoretical pI: Translated: 7.03; Mature: 7.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLVPCPYCGPRPEVEFHCGGEAHIARPADPSALDDARWADYLFVRTSNKGVHAERWLHS
CEEECCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
HGCGRWFNALRNTVSDSFLASYEMGQPRPALPTEGGK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLVPCPYCGPRPEVEFHCGGEAHIARPADPSALDDARWADYLFVRTSNKGVHAERWLHS
CEEECCCCCCCCCCEEEEECCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
HGCGRWFNALRNTVSDSFLASYEMGQPRPALPTEGGK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]