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The map label for this gene is soxB [H]

Identifier: 154244819

GI number: 154244819

Start: 968351

End: 969604

Strand: Reverse

Name: soxB [H]

Synonym: Xaut_0869

Alternate gene names: 154244819

Gene position: 969604-968351 (Counterclockwise)

Preceding gene: 154244820

Following gene: 154244818

Centisome position: 18.26

GC content: 65.95

Gene sequence:

>1254_bases
ATGCGCCGCTTTTCCATTTCCTCGCTGCTTACCGAAGCCCTCAACGGCCACCAGGGCTGGGAGCGCCAGTGGCGCAACCC
TACGCCGAAGGCCGCCTATGATGCCATCATCATCGGCGGTGGCGGCCACGGACTGGGCGCCGCCTATTATCTCGCCAAGG
AACACGGCCTCACCAATATCGCGGTGCTGGAAAAGGGCTGGATCGGCGGCGGCAATGCCGGGCGCAACACCACCATCATC
CGCTCCAATTATCTCTATGACGAAAGCGCAGCACTGTTCGAGCACGCGGTGAAGCTGTGGGAAGGACTATCCCAGGAGCT
GAACTACAACGTCATGTTCTCCCAGCGCGGCGTGCTGATGCTGGCGCACAACGCGCACGACGTGCAGAGCTTCAAACGCC
ACGTCTATTCCAACCGGCTCAACGGCATCGACAACGAGTGGATGACGCCGGAACAGGCCAAGGAGTTCTGCCCGCCGCTG
AACATCTCCCCGGACATCCGCTATCCGGTGATGGGCGCGGCGCTGCAGCGGCGCGGCGGCACGGCGCGGCATGATGCGGT
GGTGTGGGGCTATGCCCGCGGCGCCGATGCGCTGGGCGTGGACATCATCCAGAATTGCGAGGTCACCGCCATCACCCGCG
GCCCGGACGGCGCGGTGACGGGGGTGGAAACCTCCCGCGGCGCCATCAAGACAAAGAAGATCGGCGTCTCGGTGGCCGGC
CACACCTCCATGGTGATGGGCATGGCCGGGGTGCGCATGCCGCTGGAGAGCTTCCCGCTGCAGGCGCTGGTGTCCGAGCC
GGTGAAGCCGTGCTTTTCCTGCGTGCTCATGTCGAACGCGGTGCACGCCTACATCTCGCAGTCCGACAAGGGCGAACTCG
TGATCGGCGCGGGCACCGACCAGTATGTGTCGTACAGCCAGCAGGGCGGCCTGCACATCACCACCCACACGCTGGACGCC
ATCTGCGAGCTGTTCCCGCAATTCACCCGCATGAAGATGCTGCGCTCCTGGGGCGGCATCGTGGATGTGACGCCGGACCG
CTCACCCATCACCGGCAAGACGCCGGTGAAGGGGCTCTATGTGAATTGCGGCTGGGGCACCGGCGGCTTCAAGGCGACGC
CGGGCTCGGCCCATGTGTTCGCCCACACCATCGCCCGCGACGAGCCCCACCCCATCAACGCCCCCTTCACCCTCGACCGC
TTCCGCACCGGCCGCCTCATCGACGAGGCAGCGGCGGCGGCCGTTGCCCACTGA

Upstream 100 bases:

>100_bases
CCCCACCCCCGTCGCATCCATTCCAGAATCCGGTCGCATTTGAACGAGAACGCCACCCCGGCCGGGCGCATCCTGGCTCA
AGAACAAGGACGTGAGGCCC

Downstream 100 bases:

>100_bases
GGATTCGCACCATGCTCCTCGTTCCCTGCCCCTATTGCGGACCGCGCCCCGAGGTGGAATTCCACTGCGGCGGCGAGGCC
CATATCGCCCGCCCGGCCGA

Product: sarcosine oxidase subunit beta family protein

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 417

Protein sequence:

>417_residues
MRRFSISSLLTEALNGHQGWERQWRNPTPKAAYDAIIIGGGGHGLGAAYYLAKEHGLTNIAVLEKGWIGGGNAGRNTTII
RSNYLYDESAALFEHAVKLWEGLSQELNYNVMFSQRGVLMLAHNAHDVQSFKRHVYSNRLNGIDNEWMTPEQAKEFCPPL
NISPDIRYPVMGAALQRRGGTARHDAVVWGYARGADALGVDIIQNCEVTAITRGPDGAVTGVETSRGAIKTKKIGVSVAG
HTSMVMGMAGVRMPLESFPLQALVSEPVKPCFSCVLMSNAVHAYISQSDKGELVIGAGTDQYVSYSQQGGLHITTHTLDA
ICELFPQFTRMKMLRSWGGIVDVTPDRSPITGKTPVKGLYVNCGWGTGGFKATPGSAHVFAHTIARDEPHPINAPFTLDR
FRTGRLIDEAAAAAVAH

Sequences:

>Translated_417_residues
MRRFSISSLLTEALNGHQGWERQWRNPTPKAAYDAIIIGGGGHGLGAAYYLAKEHGLTNIAVLEKGWIGGGNAGRNTTII
RSNYLYDESAALFEHAVKLWEGLSQELNYNVMFSQRGVLMLAHNAHDVQSFKRHVYSNRLNGIDNEWMTPEQAKEFCPPL
NISPDIRYPVMGAALQRRGGTARHDAVVWGYARGADALGVDIIQNCEVTAITRGPDGAVTGVETSRGAIKTKKIGVSVAG
HTSMVMGMAGVRMPLESFPLQALVSEPVKPCFSCVLMSNAVHAYISQSDKGELVIGAGTDQYVSYSQQGGLHITTHTLDA
ICELFPQFTRMKMLRSWGGIVDVTPDRSPITGKTPVKGLYVNCGWGTGGFKATPGSAHVFAHTIARDEPHPINAPFTLDR
FRTGRLIDEAAAAAVAH
>Mature_417_residues
MRRFSISSLLTEALNGHQGWERQWRNPTPKAAYDAIIIGGGGHGLGAAYYLAKEHGLTNIAVLEKGWIGGGNAGRNTTII
RSNYLYDESAALFEHAVKLWEGLSQELNYNVMFSQRGVLMLAHNAHDVQSFKRHVYSNRLNGIDNEWMTPEQAKEFCPPL
NISPDIRYPVMGAALQRRGGTARHDAVVWGYARGADALGVDIIQNCEVTAITRGPDGAVTGVETSRGAIKTKKIGVSVAG
HTSMVMGMAGVRMPLESFPLQALVSEPVKPCFSCVLMSNAVHAYISQSDKGELVIGAGTDQYVSYSQQGGLHITTHTLDA
ICELFPQFTRMKMLRSWGGIVDVTPDRSPITGKTPVKGLYVNCGWGTGGFKATPGSAHVFAHTIARDEPHPINAPFTLDR
FRTGRLIDEAAAAAVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG0665

COG function: function code E; Glycine/D-amino acid oxidases (deaminating)

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=394, Percent_Identity=24.3654822335025, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI21361378, Length=394, Percent_Identity=24.3654822335025, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI24797151, Length=408, Percent_Identity=23.0392156862745, Blast_Score=70, Evalue=4e-12,
Organism=Drosophila melanogaster, GI20130091, Length=389, Percent_Identity=22.879177377892, Blast_Score=79, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45185; Mature: 45185

Theoretical pI: Translated: 8.37; Mature: 8.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRFSISSLLTEALNGHQGWERQWRNPTPKAAYDAIIIGGGGHGLGAAYYLAKEHGLTNI
CCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCHHHEEEHHHCCCCEE
AVLEKGWIGGGNAGRNTTIIRSNYLYDESAALFEHAVKLWEGLSQELNYNVMFSQRGVLM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEE
LAHNAHDVQSFKRHVYSNRLNGIDNEWMTPEQAKEFCPPLNISPDIRYPVMGAALQRRGG
EECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC
TARHDAVVWGYARGADALGVDIIQNCEVTAITRGPDGAVTGVETSRGAIKTKKIGVSVAG
CCCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCEECCCCCCCCEEEEEEEEEECC
HTSMVMGMAGVRMPLESFPLQALVSEPVKPCFSCVLMSNAVHAYISQSDKGELVIGAGTD
CHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
QYVSYSQQGGLHITTHTLDAICELFPQFTRMKMLRSWGGIVDVTPDRSPITGKTPVKGLY
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEE
VNCGWGTGGFKATPGSAHVFAHTIARDEPHPINAPFTLDRFRTGRLIDEAAAAAVAH
EEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHCC
>Mature Secondary Structure
MRRFSISSLLTEALNGHQGWERQWRNPTPKAAYDAIIIGGGGHGLGAAYYLAKEHGLTNI
CCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCEEEEEECCCCCCCHHHEEEHHHCCCCEE
AVLEKGWIGGGNAGRNTTIIRSNYLYDESAALFEHAVKLWEGLSQELNYNVMFSQRGVLM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCCEEE
LAHNAHDVQSFKRHVYSNRLNGIDNEWMTPEQAKEFCPPLNISPDIRYPVMGAALQRRGG
EECCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCC
TARHDAVVWGYARGADALGVDIIQNCEVTAITRGPDGAVTGVETSRGAIKTKKIGVSVAG
CCCCCEEEEEECCCCCCCCHHHHCCCCEEEEECCCCCCEECCCCCCCCEEEEEEEEEECC
HTSMVMGMAGVRMPLESFPLQALVSEPVKPCFSCVLMSNAVHAYISQSDKGELVIGAGTD
CHHHHHHHHHCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCH
QYVSYSQQGGLHITTHTLDAICELFPQFTRMKMLRSWGGIVDVTPDRSPITGKTPVKGLY
HHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCEEE
VNCGWGTGGFKATPGSAHVFAHTIARDEPHPINAPFTLDRFRTGRLIDEAAAAAVAH
EEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCEEHHHHCCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]