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The map label for this gene is rbfA

Identifier: 154244249

GI number: 154244249

Start: 297635

End: 298090

Strand: Reverse

Name: rbfA

Synonym: Xaut_0292

Alternate gene names: 154244249

Gene position: 298090-297635 (Counterclockwise)

Preceding gene: 154244250

Following gene: 154244248

Centisome position: 5.61

GC content: 68.64

Gene sequence:

>456_bases
ATGAAACCTGATACCCGCACGGGGGGCGGCCCCTCCCAGCGCATGCTGCGCGTGGGCGAGCTTGTCCGCCACGCGCTGGC
CGACGTGCTCCAGCGCGGCTCCGTCACCGATCCGGTGCTCGCCGCCCACATCATCACGGTGCCTGAGGTGCGCATGTCGC
CGGACCTCAAGATCGCCACCTGCTACGTCATGCCCCTCGGCGGCAAGGACATCACCCCGGTGATCAAGGCGCTGGCGGCC
AATGCCCGCTACCTGCGCCTGGAGGTCGGCCGCCGCATGGAGCTGAAATCCGTGCCCGAGCTGCGCTTCCGCGAGGACAC
CTCGTTCGACGAGGGTGCCCGCATGGACGCCCTGCTGCGCTCGCCCAAGGTGGTGCGCGACCTCGATGACACCTCCTCGG
ATGACACGTCCCCGGACGCCAACACCGACACCGACAAAGAGACCGACGCCGAATGA

Upstream 100 bases:

>100_bases
GGAGCGGCACGGTCCAAACCCGTCCGCTCCCTTTTGAAGGAGAAGGTGCCCCGGCCACGGTCCAGCCAAAGCCCGGCACC
CGCAAAGGCATTCTAGACCC

Downstream 100 bases:

>100_bases
CCGCCCCCTTTGCTGCCGACGCCGCCGCCCCGATCCTCGCCGCCGAGGCTGACGCCCCCGTCGCGGCCGATGCGACCGCC
GCTCAGGCCCTGCCGGACGG

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 151

Protein sequence:

>151_residues
MKPDTRTGGGPSQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIATCYVMPLGGKDITPVIKALAA
NARYLRLEVGRRMELKSVPELRFREDTSFDEGARMDALLRSPKVVRDLDDTSSDDTSPDANTDTDKETDAE

Sequences:

>Translated_151_residues
MKPDTRTGGGPSQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIATCYVMPLGGKDITPVIKALAA
NARYLRLEVGRRMELKSVPELRFREDTSFDEGARMDALLRSPKVVRDLDDTSSDDTSPDANTDTDKETDAE
>Mature_151_residues
MKPDTRTGGGPSQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIATCYVMPLGGKDITPVIKALAA
NARYLRLEVGRRMELKSVPELRFREDTSFDEGARMDALLRSPKVVRDLDDTSSDDTSPDANTDTDKETDAE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_XANP2 (A7IC07)

Other databases:

- EMBL:   CP000781
- RefSeq:   YP_001415207.1
- ProteinModelPortal:   A7IC07
- SMR:   A7IC07
- STRING:   A7IC07
- GeneID:   5423994
- GenomeReviews:   CP000781_GR
- KEGG:   xau:Xaut_0292
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   LRQMKYM
- ProtClustDB:   PRK00521
- BioCyc:   XAUT78245:XAUT_0292-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 16604; Mature: 16604

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPDTRTGGGPSQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIAT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEE
CYVMPLGGKDITPVIKALAANARYLRLEVGRRMELKSVPELRFREDTSFDEGARMDALLR
EEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
SPKVVRDLDDTSSDDTSPDANTDTDKETDAE
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPDTRTGGGPSQRMLRVGELVRHALADVLQRGSVTDPVLAAHIITVPEVRMSPDLKIAT
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEE
CYVMPLGGKDITPVIKALAANARYLRLEVGRRMELKSVPELRFREDTSFDEGARMDALLR
EEEEECCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
SPKVVRDLDDTSSDDTSPDANTDTDKETDAE
CCHHHHHCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA