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The map label for this gene is sufD [C]

Identifier: 154244044

GI number: 154244044

Start: 93141

End: 94481

Strand: Direct

Name: sufD [C]

Synonym: Xaut_0086

Alternate gene names: 154244044

Gene position: 93141-94481 (Clockwise)

Preceding gene: 154244043

Following gene: 154244045

Centisome position: 1.75

GC content: 69.8

Gene sequence:

>1341_bases
ATGGCCGCCGCGACCTCTGCCCAGATCCGACCCATGAAGACCAGTGCCGAGCTGGCGCTGGCCGAGACCTTCGCTGCCGC
GCGCACCGCCCTTCCCGGCGGCGCGGACGTGGCGGCCCAGCGCGCCGCCGCCTTCGACACCTTCGCCGATGTGGGCCTGC
CCCATCGCCGCGTGGAGGCCTGGCGCTATACCGACCTGCGCGCCTTGATGCGCGAGGCCCGTCCGCTCGCGGCCCCGCCT
GATGCGGAGGCCAAGGCCGCTGCTGCCACGGCCGGCGCCATGCTGGCAGGCCTCGGCTTCCGCCGCCTGGTTGTCGTCAA
TGGCGCCTTCGTGCCCGAGCTGTCGGACCTCGCAGGCCTTGAAGCCGGCCTGTCCATCCGCTCCATGGCGGACGCGCTGA
CCAATGGCGATGCGCTTACGGGCCAACTGGGGCAGACGGTGGCGTCGTCGGACGCAGTGCTGGCGCTGAACACCGCGCTC
ATGGGCGACGGCGTGGTGCTGCACGTGGCTGCCGGCGCGGTCATCGAGCGTCCGGTCGAGCTGGTCTTCGTGACCACGCA
GACGACCCCCGTCTCCATGTTCACCCGCTCCCTCGTGGTGGTGGAGGAGGGGGCATCCCTCACCCTCATCGAGAGCCATG
AGGGCCCCGCGGGCGTCGCCTACCAGGTCAACACCGCGCTGGAACTGGTGGTGGGCGCCGGCGCCAATGTGGAGCGGGTC
AAGATCACGGCGGAAGGCTCGGATGCGGTGCATCTCGCCACGCTCCTTGCCAAGGTCGACGCCAACGCCACCTTCGCCAA
CACCTTCTTCACCACCGGCGGCCTGGTGGTGCGCAACCAGCTTCTCGGACACCTCGCCGGCGAAGCGATCCACGCCCGCA
TGAATGGCGTGAGCCTGCTGTCAGGCAAGCAGCATGCGGACACCCTGTTGTCGGTGGACCATGCGGCGCCGGCCGGTGAG
AGCCGGGAATCCTTCCGCGCCGTTCTCGATGGCGCGTCGCAGGACATCTTCCAGGGCAAGATCGCCGTGCGCCAGGCGGC
GCAGAAGACCGATGCCCGCATGCTCAGCCGTGCCCTGCTTTTGACCGAGACGGCGGAGGCCTGCGCCAAGCCGGAGCTGG
AGATCTTCGCTGACGACGTGCAGTGCGGCCACGGCTGCACCACCGGCACGCTGGACCAGCAGCTGAAATTCTACCTCATG
TCCCGCGGCATCGCCGCGAAGGAGGCGGAAGCGTTGCTCATCCAGGCCTTTGTGGGCGAGGTGCTCGACGCCATCGGCAA
CGAGGGCGTGCGCGCGGCGCTGACGGATGCGACCCAGGCCTGGCTCCTGGGTCGGGAGTGA

Upstream 100 bases:

>100_bases
TTCGCCGCCGGTCGCATCGTGCACACGGGCGGCAAGGAACTGGCGCTGGAGCTGGAAGCCACCGGCTACGCCCAGTACCA
GAACGAGGCGGCGTGATCCC

Downstream 100 bases:

>100_bases
ATGATGCTTCCTCTCCCCGCTCCGCACCCTGCCGTTTCCAACGGCAGCTATGACGTCCTGCGCGTACGCGAGGACTTTCC
CATCCTCGACCTGAAGGTCA

Product: FeS assembly protein SufD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 445

Protein sequence:

>446_residues
MAAATSAQIRPMKTSAELALAETFAAARTALPGGADVAAQRAAAFDTFADVGLPHRRVEAWRYTDLRALMREARPLAAPP
DAEAKAAAATAGAMLAGLGFRRLVVVNGAFVPELSDLAGLEAGLSIRSMADALTNGDALTGQLGQTVASSDAVLALNTAL
MGDGVVLHVAAGAVIERPVELVFVTTQTTPVSMFTRSLVVVEEGASLTLIESHEGPAGVAYQVNTALELVVGAGANVERV
KITAEGSDAVHLATLLAKVDANATFANTFFTTGGLVVRNQLLGHLAGEAIHARMNGVSLLSGKQHADTLLSVDHAAPAGE
SRESFRAVLDGASQDIFQGKIAVRQAAQKTDARMLSRALLLTETAEACAKPELEIFADDVQCGHGCTTGTLDQQLKFYLM
SRGIAAKEAEALLIQAFVGEVLDAIGNEGVRAALTDATQAWLLGRE

Sequences:

>Translated_446_residues
MAAATSAQIRPMKTSAELALAETFAAARTALPGGADVAAQRAAAFDTFADVGLPHRRVEAWRYTDLRALMREARPLAAPP
DAEAKAAAATAGAMLAGLGFRRLVVVNGAFVPELSDLAGLEAGLSIRSMADALTNGDALTGQLGQTVASSDAVLALNTAL
MGDGVVLHVAAGAVIERPVELVFVTTQTTPVSMFTRSLVVVEEGASLTLIESHEGPAGVAYQVNTALELVVGAGANVERV
KITAEGSDAVHLATLLAKVDANATFANTFFTTGGLVVRNQLLGHLAGEAIHARMNGVSLLSGKQHADTLLSVDHAAPAGE
SRESFRAVLDGASQDIFQGKIAVRQAAQKTDARMLSRALLLTETAEACAKPELEIFADDVQCGHGCTTGTLDQQLKFYLM
SRGIAAKEAEALLIQAFVGEVLDAIGNEGVRAALTDATQAWLLGRE
>Mature_445_residues
AAATSAQIRPMKTSAELALAETFAAARTALPGGADVAAQRAAAFDTFADVGLPHRRVEAWRYTDLRALMREARPLAAPPD
AEAKAAAATAGAMLAGLGFRRLVVVNGAFVPELSDLAGLEAGLSIRSMADALTNGDALTGQLGQTVASSDAVLALNTALM
GDGVVLHVAAGAVIERPVELVFVTTQTTPVSMFTRSLVVVEEGASLTLIESHEGPAGVAYQVNTALELVVGAGANVERVK
ITAEGSDAVHLATLLAKVDANATFANTFFTTGGLVVRNQLLGHLAGEAIHARMNGVSLLSGKQHADTLLSVDHAAPAGES
RESFRAVLDGASQDIFQGKIAVRQAAQKTDARMLSRALLLTETAEACAKPELEIFADDVQCGHGCTTGTLDQQLKFYLMS
RGIAAKEAEALLIQAFVGEVLDAIGNEGVRAALTDATQAWLLGRE

Specific function: FhuF function [C]

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI1787971, Length=385, Percent_Identity=30.1298701298701, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87081955, Length=318, Percent_Identity=24.2138364779874, Blast_Score=79, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825
- InterPro:   IPR011542 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 46243; Mature: 46112

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAATSAQIRPMKTSAELALAETFAAARTALPGGADVAAQRAAAFDTFADVGLPHRRVEA
CCCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
WRYTDLRALMREARPLAAPPDAEAKAAAATAGAMLAGLGFRRLVVVNGAFVPELSDLAGL
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCC
EAGLSIRSMADALTNGDALTGQLGQTVASSDAVLALNTALMGDGVVLHVAAGAVIERPVE
CCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEHHHCCCCEEEEEECCHHHHCCEE
LVFVTTQTTPVSMFTRSLVVVEEGASLTLIESHEGPAGVAYQVNTALELVVGAGANVERV
EEEEEECCCHHHHHHEEEEEEECCCEEEEEECCCCCCCEEEEECCEEEEEECCCCCEEEE
KITAEGSDAVHLATLLAKVDANATFANTFFTTGGLVVRNQLLGHLAGEAIHARMNGVSLL
EEEECCCCHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
SGKQHADTLLSVDHAAPAGESRESFRAVLDGASQDIFQGKIAVRQAAQKTDARMLSRALL
CCCCHHHHHHEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTETAEACAKPELEIFADDVQCGHGCTTGTLDQQLKFYLMSRGIAAKEAEALLIQAFVGE
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLDAIGNEGVRAALTDATQAWLLGRE
HHHHHCCCCCEEEHHHHHHHHHCCCC
>Mature Secondary Structure 
AAATSAQIRPMKTSAELALAETFAAARTALPGGADVAAQRAAAFDTFADVGLPHRRVEA
CCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHH
WRYTDLRALMREARPLAAPPDAEAKAAAATAGAMLAGLGFRRLVVVNGAFVPELSDLAGL
HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHCC
EAGLSIRSMADALTNGDALTGQLGQTVASSDAVLALNTALMGDGVVLHVAAGAVIERPVE
CCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCEEEEEHHHCCCCEEEEEECCHHHHCCEE
LVFVTTQTTPVSMFTRSLVVVEEGASLTLIESHEGPAGVAYQVNTALELVVGAGANVERV
EEEEEECCCHHHHHHEEEEEEECCCEEEEEECCCCCCCEEEEECCEEEEEECCCCCEEEE
KITAEGSDAVHLATLLAKVDANATFANTFFTTGGLVVRNQLLGHLAGEAIHARMNGVSLL
EEEECCCCHHHHHHHHHHHCCCCEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEE
SGKQHADTLLSVDHAAPAGESRESFRAVLDGASQDIFQGKIAVRQAAQKTDARMLSRALL
CCCCHHHHHHEECCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTETAEACAKPELEIFADDVQCGHGCTTGTLDQQLKFYLMSRGIAAKEAEALLIQAFVGE
HHHHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
VLDAIGNEGVRAALTDATQAWLLGRE
HHHHHCCCCCEEEHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]