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The map label for this gene is cspB [H]

Identifier: 153949918

GI number: 153949918

Start: 436795

End: 437007

Strand: Reverse

Name: cspB [H]

Synonym: YpsIP31758_0376

Alternate gene names: 153949918

Gene position: 437007-436795 (Counterclockwise)

Preceding gene: 153949837

Following gene: 153950481

Centisome position: 9.25

GC content: 43.66

Gene sequence:

>213_bases
ATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTGACGCTGGTAAAGGTTTTGGTTTCATCTCTCCGGCTGATGGCAG
CAAAGATGTGTTCGTTCACTTCTCTGCTATCCAGAGTAATGATTTCAAAACCCTGGATGAAGGCCAAAATGTGGAGTTCT
CTATCGAGAACGGCGCTAAAGGCCCCTCAGCAGTAAACGTAATCGCCCTGTAA

Upstream 100 bases:

>100_bases
TCCGTGAGTCTCCTCCTAAGTGCCCAAGTAAGACATCCTCTGAAAGACAGACCACGTTCGCTACACTATTGTGGCAAAAA
TAATTGAAGGAAGTATCTCT

Downstream 100 bases:

>100_bases
TTCAGTGTGATTCGGGCGTTGGCAACCGACAGCGATGACGGGTTACCCCGAGCAGTGTTGCCAGCACCCACGTAAAAAAG
TTATACCCGGTTGACCGTAA

Product: cold shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL

Sequences:

>Translated_70_residues
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL
>Mature_69_residues
SNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=81.4285714285714, Blast_Score=119, Evalue=5e-29,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=75.7142857142857, Blast_Score=116, Evalue=3e-28,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=79.4117647058823, Blast_Score=113, Evalue=3e-27,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=72.8571428571428, Blast_Score=108, Evalue=8e-26,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=76.4705882352941, Blast_Score=106, Evalue=2e-25,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=74.6268656716418, Blast_Score=105, Evalue=7e-25,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=53.7313432835821, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=50.7462686567164, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=45.3125, Blast_Score=69, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=44.2622950819672, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7468; Mature: 7337

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAK
CCCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GPSAVNVIAL
CCCEEEEEEC
>Mature Secondary Structure 
SNKMTGLVKWFDAGKGFGFISPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAK
CCCCCEEEEEEECCCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GPSAVNVIAL
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA