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The map label for this gene is cspB [H]

Identifier: 153950481

GI number: 153950481

Start: 436323

End: 436535

Strand: Reverse

Name: cspB [H]

Synonym: YpsIP31758_0375

Alternate gene names: 153950481

Gene position: 436535-436323 (Counterclockwise)

Preceding gene: 153949918

Following gene: 153948953

Centisome position: 9.24

GC content: 43.19

Gene sequence:

>213_bases
ATGTCTAATAAAATGACTGGTTTAGTAAAATGGTTTAACGCTGATAAAGGTTTTGGTTTCATCACTCCGGCCGATGGCAG
CAAAGATGTGTTCGTTCACTTCTCTGCTATCCAGAGCAATGATTTTAAAACCCTGGATGAAGGCCAAAATGTGGAGTTCT
CTATCGAGAACGGCGCTAAAGGCCCCTCAGCAGTAAACGTAATCGCCCTGTAA

Upstream 100 bases:

>100_bases
CTCTTCTCCGTGAAATTCCTTCTAAGTGCCCCATAAGTTCTACCCAAGCCTATCTGGTCGCCTGTGGCGGCAATTAAAAA
TAATTGAAGGAAGTATCTCT

Downstream 100 bases:

>100_bases
TTCAGTGTGATTCGGGCGTTGGCAACCGACAGCGATGACGGGTTACCCCGAGCAGTGTTGCCAACACCCACGTAAAAAAG
TTATACCCGGTTGACCGTAA

Product: cold shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSNKMTGLVKWFNADKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL

Sequences:

>Translated_70_residues
MSNKMTGLVKWFNADKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL
>Mature_69_residues
SNKMTGLVKWFNADKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAKGPSAVNVIAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=71, Percent_Identity=42.2535211267606, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=84.2857142857143, Blast_Score=123, Evalue=2e-30,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=80, Blast_Score=122, Evalue=6e-30,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=80.8823529411765, Blast_Score=117, Evalue=2e-28,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=77.1428571428572, Blast_Score=115, Evalue=8e-28,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=79.4117647058823, Blast_Score=110, Evalue=2e-26,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=77.6119402985075, Blast_Score=108, Evalue=6e-26,
Organism=Escherichia coli, GI2367112, Length=67, Percent_Identity=52.2388059701493, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=46.875, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787840, Length=67, Percent_Identity=50.7462686567164, Blast_Score=70, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24658520, Length=61, Percent_Identity=47.5409836065574, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7540; Mature: 7408

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKMTGLVKWFNADKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAK
CCCCCCEEEEEECCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GPSAVNVIAL
CCCEEEEEEC
>Mature Secondary Structure 
SNKMTGLVKWFNADKGFGFITPADGSKDVFVHFSAIQSNDFKTLDEGQNVEFSIENGAK
CCCCCEEEEEECCCCCCEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCEEEEECCCCC
GPSAVNVIAL
CCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA