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The map label for this gene is arnD

Identifier: 153949484

GI number: 153949484

Start: 1996939

End: 1997844

Strand: Direct

Name: arnD

Synonym: YpsIP31758_1728

Alternate gene names: 153949484

Gene position: 1996939-1997844 (Clockwise)

Preceding gene: 153948868

Following gene: 153950085

Centisome position: 42.28

GC content: 49.23

Gene sequence:

>906_bases
ATGAAGCAAGTTGGCCTGAGGATTGATGTCGATACCTACCGAGGAACGCAGTACGGGGTGCCATCATTACTGACTGTTTT
AGAAAAACATGACATTCGTGCCAGTTTTTTCTTCAGTGTTGGGCCGGATAATATGGGACGCCATTTATGGCGCCTTTTTC
GTCCGCGCTTTTTATGGAAGATGCTACGTTCTAATGCTGCCTCGCTTTACGGTTGGGATATTTTACTGGCGGGCACGGCT
TGGCCAGGTAAGAAGATCGCTAAAGACTTTGGTCCGTTAATGAAAGCAGCGGCCATGGCGGGGCATGAAGTGGGGTTGCA
TGCTTGGGACCATCAAGGCTGGCAGGCCAACGTCGCTTCATGGTCACAGCAACAACTGACTGAGCAAGTACAGAGAGGAG
TTGATACTTTACAGCAGAGTATTGGTCAACCCATTAGCTGTTCTGCTGCTGCGGGGTGGCGCGCCGATGAACGGGTTCTT
GCGGTAAAACAGCAATTCGATTTTAGTTATAACAGCGATTGCCGGGGGACCCATCCTTTCCGGCCTTTGTTGCCTAATGG
CAGCTTAGGGAGTGTACAAATTCCCGTGACGCTGCCAACTTACGATGAAGTTGTCGGCGGTGAGGTGCAAGCTGAAAACT
TCAATGACTTTATTATTGACGCCATCCTACGTGATAGCGGGGTATCGGTATACACCATTCATGCTGAAGTTGAGGGGATG
TCTCAGGCAGCAATGTTTGAGCAGCTCTTGATGAGAGCAAAGCAACAAGATATTGAGTTTTGTCCGCTCAGTAAGCTGCT
ACCGTCAGATTTACAATTACTGCCTGTGGGCAAAGTAATACGCGCTGCATTTCCTGGCCGGGAAGGTTGGTTGGGTTGTC
AATCAGACATAAAGGATGCTGAATGA

Upstream 100 bases:

>100_bases
CAGAAATTGCTATGCAACAAACGGTCACTGAGACGCTGGACTTTTTCTTGCGCGCTGCCGTAATTGAGAAAACTGCAGCC
CCTAAAGATGAGTTGAACGC

Downstream 100 bases:

>100_bases
AATTATTAAAAGACAGTGGCGCAGCATTATTGGCGCTATTTTTTGTATTGGTTTATTTGTTACCGGTGAATAGCCGTTTG
TTATGGCAACCCGATGAAAC

Product: polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWKMLRSNAASLYGWDILLAGTA
WPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVASWSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVL
AVKQQFDFSYNSDCRGTHPFRPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRAAFPGREGWLGCQSDIKDAE

Sequences:

>Translated_301_residues
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWKMLRSNAASLYGWDILLAGTA
WPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVASWSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVL
AVKQQFDFSYNSDCRGTHPFRPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRAAFPGREGWLGCQSDIKDAE
>Mature_301_residues
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWKMLRSNAASLYGWDILLAGTA
WPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVASWSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVL
AVKQQFDFSYNSDCRGTHPFRPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRAAFPGREGWLGCQSDIKDAE

Specific function: Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial p

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily

Homologues:

Organism=Escherichia coli, GI1788590, Length=294, Percent_Identity=61.9047619047619, Blast_Score=391, Evalue=1e-110,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): ARND_YERP3 (A7FHH5)

Other databases:

- EMBL:   CP000720
- RefSeq:   YP_001400703.1
- ProteinModelPortal:   A7FHH5
- STRING:   A7FHH5
- GeneID:   5388309
- GenomeReviews:   CP000720_GR
- KEGG:   ypi:YpsIP31758_1728
- eggNOG:   COG0726
- HOGENOM:   HBG298639
- OMA:   CSAVAGW
- ProtClustDB:   PRK15394
- BioCyc:   YPSE349747:YPSIP31758_1728-MONOMER
- HAMAP:   MF_01870
- InterPro:   IPR011330
- InterPro:   IPR002509
- Gene3D:   G3DSA:3.20.20.370

Pfam domain/function: PF01522 Polysacc_deac_1; SSF88713 Glyco_hydro/deAcase_b/a-brl

EC number: NA

Molecular weight: Translated: 33505; Mature: 33505

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWK
CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVAS
HHHHCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHH
WSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVLAVKQQFDFSYNSDCRGTHPF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
RPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
CCCCCCCCCCCEEEEEECCCHHHHHCCEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCH
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRAAFPGREGWLGCQSDIKDA
HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCC
E
C
>Mature Secondary Structure
MKQVGLRIDVDTYRGTQYGVPSLLTVLEKHDIRASFFFSVGPDNMGRHLWRLFRPRFLWK
CCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MLRSNAASLYGWDILLAGTAWPGKKIAKDFGPLMKAAAMAGHEVGLHAWDHQGWQANVAS
HHHHCCCCEECEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCHHH
WSQQQLTEQVQRGVDTLQQSIGQPISCSAAAGWRADERVLAVKQQFDFSYNSDCRGTHPF
HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCC
RPLLPNGSLGSVQIPVTLPTYDEVVGGEVQAENFNDFIIDAILRDSGVSVYTIHAEVEGM
CCCCCCCCCCCEEEEEECCCHHHHHCCEEECCCCCHHHHHHHHHCCCCEEEEEEEECCCH
SQAAMFEQLLMRAKQQDIEFCPLSKLLPSDLQLLPVGKVIRAAFPGREGWLGCQSDIKDA
HHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA