Click here to switch to the map view.

The map label for this gene is cdaR [C]

Identifier: 153949252

GI number: 153949252

Start: 4560084

End: 4561211

Strand: Direct

Name: cdaR [C]

Synonym: YpsIP31758_4050

Alternate gene names: 153949252

Gene position: 4560084-4561211 (Clockwise)

Preceding gene: 153950800

Following gene: 153948844

Centisome position: 96.54

GC content: 47.7

Gene sequence:

>1128_bases
ATGCCAACCAGCTATCTTAAGGAAGACACCGCTCGCCAAATCGTTCAGCGCGCCATGAGCATTATTGATTACTCGGTTAA
TGTCATGAATGAACACGGCGTCATTATTGCGTCTGGTGATCCTCGCCGTTTACATCAGCGTCATGAAGGTGCCGTTTTAG
CGCTGACGGAAAACCGGATGGTCATGATCGACGAAGCCGTGGCTGGCAGGCTTAAAGGCGTTAAACCAGGAATTAACCTG
CCGATTATTTTTCGTCAGCGGATGGTGGGCGTTATTGGGATTTCGGGTGAACCCGATAAAGTGCAGGCCTATGCTGAACT
GGTGCGCATGGCGGCCGAGCTGATTTTAGAACAAGCTGAAATGTTAGAGCAAAATCAGTGGGAAAAACGCTATCGCGAAC
AGTTAACCTCTCAGCTCATTGCCCAGCAAGGCAGTGCGGCTTCAGTGGCATCAATGGCGGCCTATTTAGGATTAGACCTC
ACACTGCCACGCATTGCGCTGATCGTCAGTCTGCGTGAACAAGAGCACGCTCATCAGCGGGATCTGGTCGAAATATTAAG
CAACCACAGCCGTGAAACATTGGTCACTTTACATGGGTTTGAGCGGGTTGTGGTGTTATTGCCGCTGAACCTTGCACACA
GTGACGATCGTGAAGTGACGGCCAGAAAGGCTTTGCGCAAATTGTATGCGCTGCTACAGCCGCGTTTTAGTCTGAATATT
TATGTTGGTGGCATTTTTGAAGGCCTAAATGGGCTGCAACGATCCTATCTTAGCGCGCAAGCGATGCAAGAAACGGCATT
GCGACAAAAGCTCACGCAACCGCTCATGTTCTATCAAGACCATTTTTTGACCGTTCTTCTGAATGATTTTGCCGGGAGTT
GGCAGGCTGGTGAACTGAGCTCTGCCTGGCAAACACTGCGTCAGGCGGATAGCAAAGACGTTCTGTGTCACACTCTGCGT
TGTTACTTTGTACAGAATTGTGATCTGTCTCAAACGTCAAAACAACTGCATATCCATGTCAATACCCTACGCTATCGGCT
ACAGAAGATTGAAGCTATAACAGCTTTAAAAATCAATGAATTAAATTCAATTCTTCAGCTCTATATTGGCATGAAAATAG
AGAGATAA

Upstream 100 bases:

>100_bases
CTTTTATCTTAATAGATAGAATGTCTGACCTTTACCTCAACGCCCATCGCAATTTTCAGCTACATTGATCCCCCTATCCA
CTCTCAGCCTGTGACAAGTC

Downstream 100 bases:

>100_bases
TTTGTAGCATCCTCCAAAAATCAGCCGTTTTAGCCGTCCATTTTCTGGCGGTTTCACTCAAGCTATTTTTCTCCCGCCCA
CCATAATGGCGACGTTGTTC

Product: carbohydrate diacid regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRMVMIDEAVAGRLKGVKPGINL
PIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDL
TLPRIALIVSLREQEHAHQRDLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNI
YVGGIFEGLNGLQRSYLSAQAMQETALRQKLTQPLMFYQDHFLTVLLNDFAGSWQAGELSSAWQTLRQADSKDVLCHTLR
CYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINELNSILQLYIGMKIER

Sequences:

>Translated_375_residues
MPTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRMVMIDEAVAGRLKGVKPGINL
PIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDL
TLPRIALIVSLREQEHAHQRDLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNI
YVGGIFEGLNGLQRSYLSAQAMQETALRQKLTQPLMFYQDHFLTVLLNDFAGSWQAGELSSAWQTLRQADSKDVLCHTLR
CYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINELNSILQLYIGMKIER
>Mature_374_residues
PTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRMVMIDEAVAGRLKGVKPGINLP
IIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAEMLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDLT
LPRIALIVSLREQEHAHQRDLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNIY
VGGIFEGLNGLQRSYLSAQAMQETALRQKLTQPLMFYQDHFLTVLLNDFAGSWQAGELSSAWQTLRQADSKDVLCHTLRC
YFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINELNSILQLYIGMKIER

Specific function: Seems To Regulate The Expression Of The Operons For The Enzymes Involved In D-Galactarate, D-Glucarate And D-Glycerate Utilization. [C]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=387, Percent_Identity=36.4341085271318, Blast_Score=219, Evalue=3e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 42550; Mature: 42419

Theoretical pI: Translated: 8.44; Mature: 8.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRM
CCCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHCCCCEEEEECCCE
VMIDEAVAGRLKGVKPGINLPIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAE
EEEEHHHHHHHCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
MLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDLTLPRIALIVSLREQEHAHQR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
DLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNI
HHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
YVGGIFEGLNGLQRSYLSAQAMQETALRQKLTQPLMFYQDHFLTVLLNDFAGSWQAGELS
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SAWQTLRQADSKDVLCHTLRCYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINE
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
LNSILQLYIGMKIER
HHHHHHHHHCCCCCC
>Mature Secondary Structure 
PTSYLKEDTARQIVQRAMSIIDYSVNVMNEHGVIIASGDPRRLHQRHEGAVLALTENRM
CCCHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEECCCHHHHHHHCCCCEEEEECCCE
VMIDEAVAGRLKGVKPGINLPIIFRQRMVGVIGISGEPDKVQAYAELVRMAAELILEQAE
EEEEHHHHHHHCCCCCCCCCCHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
MLEQNQWEKRYREQLTSQLIAQQGSAASVASMAAYLGLDLTLPRIALIVSLREQEHAHQR
HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
DLVEILSNHSRETLVTLHGFERVVVLLPLNLAHSDDREVTARKALRKLYALLQPRFSLNI
HHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEE
YVGGIFEGLNGLQRSYLSAQAMQETALRQKLTQPLMFYQDHFLTVLLNDFAGSWQAGELS
EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
SAWQTLRQADSKDVLCHTLRCYFVQNCDLSQTSKQLHIHVNTLRYRLQKIEAITALKINE
HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHH
LNSILQLYIGMKIER
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]