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The map label for this gene is xylR [H]

Identifier: 153949200

GI number: 153949200

Start: 4621348

End: 4622541

Strand: Reverse

Name: xylR [H]

Synonym: YpsIP31758_4098

Alternate gene names: 153949200

Gene position: 4622541-4621348 (Counterclockwise)

Preceding gene: 153949642

Following gene: 153950830

Centisome position: 97.87

GC content: 48.58

Gene sequence:

>1194_bases
ATGTTTGAAAAACGCTACCGGATCACCTTGTTGTTTAACGCTAACAAAGTGTATGACCGGCAGGTGGTAGAAGGCGTGGG
CGAGTATTTACAAGCCTCGCAATGTAATTGGGATATTTTTATTGAAGAGGATTTTCGCTGCCGAATCGACAATATTAAGG
ATTGGCTGGGCGATGGTGTGATTGCGGATTTTGATGATCGGCAGATAGAGCAGCTACTGGCAAATGTGAACGTACCGATT
GTCGGCGTCGGCGGCTCTTATCATCAGTCGGAAGATTATCCATCGGTAGATTATATCGCGACTGACAATAAGGCATTGGT
CAATGCGGCATTTATGCATTTGAAAGAGAAGGGATTAAACCGTTTTGCTTTCTATGGGTTGCCCGCCAGTTGCGGTATGC
GCTGGGCACAGGAGCGGGAATATGCGTTTCGCCAATTAGTGTCTGCCGAACAATATCAAGGCGTGGTTTATCAAGGGATG
GCAACGGCTCCGGATAATTGGCAATACGCACAAAACCGGCTGGCCGATTGGGTACAAACCTTACCGCATCAGACGGGGAT
TATCGCGGTGACCGATGCACGGGCACGTCATTTATTGCAAGTGTGTGAGCATCTGGATATTGCCGTACCAGAGAAACTGA
GTGTGATCGGTATTGATAATGAAGAGTTAACCCGTTATTTATCGCGGGTGGCGCTCTCTTCGGTGGTTCAGGGAACCCGA
CAAATGGGGTATCGGGCGGCCAAGCTACTCCATCAACGTCTCAAGCTACGGCAAAAACAGCAAACAGACCCGCCCTTACA
GCGTATTTTGGTCCCACCAGTGAAAGTCATGGCCCGCCGCTCTACGGACTTCCGCTCGTTACGTGACCCGGCGGTTATTC
AGGCGATGCATTATATTCGCCACCACGCTTGCAAGGGGATCAAAGTTGAACAGGTATTGGATGCGGTAGGGATGTCGCGC
TCAAATCTGGAAAAGCGTTTTAAAGATGAGGTCGGCCAAACCATTCATGGCGTGATTCATGAAGAAAAACTCGATAGGGC
GCGCAATTTACTGGCGGCGACATCACTCCCTATTAATGAGATATCACAGATGTGCGGTTATCCATCGCTACAATACTTTT
ATTCAGTGTTCAAAAAAGGTTATTCCATCACACCGAAGGAGCACCGTGACAAATACGGCGAAGTGAGTTATTGA

Upstream 100 bases:

>100_bases
GGCGGGTGTGACTTTATCCCATAGGAAAATCAGTGCCATACCGCGCTGATTTTTCTGCCTGTTCAGCCTTGATATCCCAT
GCATTTCAGGAGCTACCCCC

Downstream 100 bases:

>100_bases
CCCTTTCTGAGCGGACGATAATATCCCCTGACATTACTTTATTAGGGGATTTATTTAGCCTGCTAATCTAATGGATAGCG
CCATACAATAAACGCGCTAT

Product: xylose operon regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MFEKRYRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRIDNIKDWLGDGVIADFDDRQIEQLLANVNVPI
VGVGGSYHQSEDYPSVDYIATDNKALVNAAFMHLKEKGLNRFAFYGLPASCGMRWAQEREYAFRQLVSAEQYQGVVYQGM
ATAPDNWQYAQNRLADWVQTLPHQTGIIAVTDARARHLLQVCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTR
QMGYRAAKLLHQRLKLRQKQQTDPPLQRILVPPVKVMARRSTDFRSLRDPAVIQAMHYIRHHACKGIKVEQVLDAVGMSR
SNLEKRFKDEVGQTIHGVIHEEKLDRARNLLAATSLPINEISQMCGYPSLQYFYSVFKKGYSITPKEHRDKYGEVSY

Sequences:

>Translated_397_residues
MFEKRYRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRIDNIKDWLGDGVIADFDDRQIEQLLANVNVPI
VGVGGSYHQSEDYPSVDYIATDNKALVNAAFMHLKEKGLNRFAFYGLPASCGMRWAQEREYAFRQLVSAEQYQGVVYQGM
ATAPDNWQYAQNRLADWVQTLPHQTGIIAVTDARARHLLQVCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTR
QMGYRAAKLLHQRLKLRQKQQTDPPLQRILVPPVKVMARRSTDFRSLRDPAVIQAMHYIRHHACKGIKVEQVLDAVGMSR
SNLEKRFKDEVGQTIHGVIHEEKLDRARNLLAATSLPINEISQMCGYPSLQYFYSVFKKGYSITPKEHRDKYGEVSY
>Mature_397_residues
MFEKRYRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRIDNIKDWLGDGVIADFDDRQIEQLLANVNVPI
VGVGGSYHQSEDYPSVDYIATDNKALVNAAFMHLKEKGLNRFAFYGLPASCGMRWAQEREYAFRQLVSAEQYQGVVYQGM
ATAPDNWQYAQNRLADWVQTLPHQTGIIAVTDARARHLLQVCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTR
QMGYRAAKLLHQRLKLRQKQQTDPPLQRILVPPVKVMARRSTDFRSLRDPAVIQAMHYIRHHACKGIKVEQVLDAVGMSR
SNLEKRFKDEVGQTIHGVIHEEKLDRARNLLAATSLPINEISQMCGYPSLQYFYSVFKKGYSITPKEHRDKYGEVSY

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=395, Percent_Identity=79.4936708860759, Blast_Score=657, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 45576; Mature: 45576

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFEKRYRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRIDNIKDWLGDGV
CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCC
IADFDDRQIEQLLANVNVPIVGVGGSYHQSEDYPSVDYIATDNKALVNAAFMHLKEKGLN
EECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCC
RFAFYGLPASCGMRWAQEREYAFRQLVSAEQYQGVVYQGMATAPDNWQYAQNRLADWVQT
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHH
LPHQTGIIAVTDARARHLLQVCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTR
CCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYRAAKLLHQRLKLRQKQQTDPPLQRILVPPVKVMARRSTDFRSLRDPAVIQAMHYIR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCHHHHHCCHHHHHHHHHHH
HHACKGIKVEQVLDAVGMSRSNLEKRFKDEVGQTIHGVIHEEKLDRARNLLAATSLPINE
HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ISQMCGYPSLQYFYSVFKKGYSITPKEHRDKYGEVSY
HHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCC
>Mature Secondary Structure
MFEKRYRITLLFNANKVYDRQVVEGVGEYLQASQCNWDIFIEEDFRCRIDNIKDWLGDGV
CCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHCCCC
IADFDDRQIEQLLANVNVPIVGVGGSYHQSEDYPSVDYIATDNKALVNAAFMHLKEKGLN
EECCCHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCC
RFAFYGLPASCGMRWAQEREYAFRQLVSAEQYQGVVYQGMATAPDNWQYAQNRLADWVQT
EEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHH
LPHQTGIIAVTDARARHLLQVCEHLDIAVPEKLSVIGIDNEELTRYLSRVALSSVVQGTR
CCCCCCEEEEECHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHH
QMGYRAAKLLHQRLKLRQKQQTDPPLQRILVPPVKVMARRSTDFRSLRDPAVIQAMHYIR
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHHHCCCHHHHHCCHHHHHHHHHHH
HHACKGIKVEQVLDAVGMSRSNLEKRFKDEVGQTIHGVIHEEKLDRARNLLAATSLPINE
HHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
ISQMCGYPSLQYFYSVFKKGYSITPKEHRDKYGEVSY
HHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]