Click here to switch to the map view.

The map label for this gene is fimB [H]

Identifier: 153948870

GI number: 153948870

Start: 188789

End: 189523

Strand: Reverse

Name: fimB [H]

Synonym: YpsIP31758_0167

Alternate gene names: 153948870

Gene position: 189523-188789 (Counterclockwise)

Preceding gene: 153950896

Following gene: 153948156

Centisome position: 4.01

GC content: 48.03

Gene sequence:

>735_bases
ATGACCACCTGTCGTGTACTGACTCTCCCTGCGCTGACGATTGGCGTGCTGATAATGAGTGCGCTGGCAACGAGTGCAGT
GGCAAGTGTGATTGCAGAGAGAACACGTATTGTCTTCAGTGAAGGCAGTACAGAAGAGTCACTGCAACTGGTTAACAGCA
ATAGCTACCCGGTAGCGGTACAAGTTTGGGTGGATGACGGCAATTTGATGGCGACGCCTGATAAGGCTGTTTCACCCATA
TTGGTGTTACCTCCGGTATTCCGGTTACAACCTCAAGCACAGCGTAGCCTGCGGTTGATCTTATCTGGTGGGAGTAAATT
ACCTGCGGATAGGGAATCTGCATTCTGGCTAAATATTTACGAAATCCCGCCTAAGGCAACCCCCAAATCCGGTGATGAAT
CTTTTGTTACGCTGGCCCTACGGATGCAATATAAAGTCTTTTACCGCCCTAAAAACCTACCCGCGCCAGGAGATATTTTA
GGCAAGGCATTAACCTTTAGCCTCGAGCGTAACGGCGACAGTGCGCTGATTAAGGTTAACAATCCAACCCCTTACTATGC
ATCCTTCGCTGCTTTGACCATCGGTTCAGCCGAAGGCCCTCCGGAAATGGTGGCCCCGTTCTCTCAATTAGATTTTCCAC
TAAACCGAGCGCCAATTAGCGACAACAAAACCGTCAATTTTGATTTAATTGATGATTTAGGCAACCGAAACTCTTTTAGC
CATGAGTTGAAATAA

Upstream 100 bases:

>100_bases
ACCGCCGGAGCAGTGAATGCACATGCGCAAGTGGTTATCCGTGTCCAATAATATAATGCTTAGCCGTATCAACCGTAGGC
TCCGTGGGTTGCTGCTACTC

Downstream 100 bases:

>100_bases
AGTGCGCTGCTGGGAATGGCAGTTTGGGGGCGAGTAGCGCACAGACACTGGAAGCTTATTACGGTTTGAATATAACTCAT
AATTTCTCTCCTTGTTATAT

Product: pili assembly chaperone

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 243

Protein sequence:

>244_residues
MTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPI
LVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAPGDIL
GKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNRNSFS
HELK

Sequences:

>Translated_244_residues
MTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPI
LVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAPGDIL
GKALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNRNSFS
HELK
>Mature_243_residues
TTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAVQVWVDDGNLMATPDKAVSPIL
VLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIYEIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAPGDILG
KALTFSLERNGDSALIKVNNPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNRNSFSH
ELK

Specific function: Required for the biogenesis of the filamentous hemagglutinin and the fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1786333, Length=220, Percent_Identity=32.2727272727273, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI87082203, Length=238, Percent_Identity=28.5714285714286, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1789532, Length=227, Percent_Identity=29.0748898678414, Blast_Score=101, Evalue=4e-23,
Organism=Escherichia coli, GI1787171, Length=238, Percent_Identity=30.2521008403361, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1786936, Length=201, Percent_Identity=30.3482587064677, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1790771, Length=227, Percent_Identity=28.6343612334802, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1788677, Length=159, Percent_Identity=35.8490566037736, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1786743, Length=238, Percent_Identity=29.4117647058824, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1788428, Length=223, Percent_Identity=26.0089686098655, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR001829
- InterPro:   IPR016148
- InterPro:   IPR018046
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 26537; Mature: 26406

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00635 PILI_CHAPERONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAV
CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHEEECCCCCCEEE
QVWVDDGNLMATPDKAVSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIY
EEEEECCCEEECCHHHCCCEEECCCCHHCCCHHHHCEEEEEECCCCCCCCCCCEEEEEEE
EIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAPGDILGKALTFSLERNGDSALIKVN
ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHCCEEEEEEECCCCEEEEEEC
NPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNRNSFS
CCCCCEEEEEEEEECCCCCCHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
HELK
CCCC
>Mature Secondary Structure 
TTCRVLTLPALTIGVLIMSALATSAVASVIAERTRIVFSEGSTEESLQLVNSNSYPVAV
CCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHEEECCCCCCEEE
QVWVDDGNLMATPDKAVSPILVLPPVFRLQPQAQRSLRLILSGGSKLPADRESAFWLNIY
EEEEECCCEEECCHHHCCCEEECCCCHHCCCHHHHCEEEEEECCCCCCCCCCCEEEEEEE
EIPPKATPKSGDESFVTLALRMQYKVFYRPKNLPAPGDILGKALTFSLERNGDSALIKVN
ECCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHCCEEEEEEECCCCEEEEEEC
NPTPYYASFAALTIGSAEGPPEMVAPFSQLDFPLNRAPISDNKTVNFDLIDDLGNRNSFS
CCCCCEEEEEEEEECCCCCCHHHHCCHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCC
HELK
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1360139; 1354611; 12910271 [H]