Click here to switch to the map view.

The map label for this gene is yiaF [H]

Identifier: 153948705

GI number: 153948705

Start: 4661791

End: 4662510

Strand: Reverse

Name: yiaF [H]

Synonym: YpsIP31758_4129

Alternate gene names: 153948705

Gene position: 4662510-4661791 (Counterclockwise)

Preceding gene: 153949017

Following gene: 153948113

Centisome position: 98.71

GC content: 49.44

Gene sequence:

>720_bases
ATGATTTTTGCATTGAACACCGTCCGGAACCCACGCTGGCTGGCACCTTTATTGGCGTTCTTGGTCATGTTCTTGGTGAC
CGCCTGCGGAGATAAAGAGCCAGAACAACGTAAGGCTTTTATTGATTATCTGCAAAACACCGTGATGCGCAGTGGGATGA
AACTGCCAACACTGAGTGAAGACCAAAAGCAGAAGTTTGGCCCTTATGTCAGCGACTACGCGATTTTAGTCACTTTTTCA
CAGCAATTAAGTAAGTCAGTTGATGCCAGTCTGGTCCCGGCTATTGAGCAAATCAATCAAATCCGCGTGGCACAGGATTA
CCTCAGTAAGCGTGATGCGTTACAGCAGTCTGCGGGTGCGCTGAACCTGTTAGTGCAACAAATCCGCACTGCCAAAGCTC
AAGCTGACAGCGCCCAAGCCGCATTGAAGCTGCCAGATGACTTGAAAGTGGTGTTCAACAGAGCCTTTGATAACATTGTG
ACTCAGCCTGCTAATGTGTTGATTCCAGCAGTGCCGGTGGTCTCTTCATTTGTGCAAGATCTGGTTCAGGTTGGGGATTT
CCTGCAACAGCAGGGTACGCAAGTGACCTTTAATAACGGTGGCATTCAATTCCAGACTCCGCAGCAAGCCGCTCAGTACA
ACACGATGATGAGCAACTTGGTCGCCAAGTACCCGGAGATGATGGCCGCGCAAAAGCGCGTGATGAAGGTAATGCAGTAA

Upstream 100 bases:

>100_bases
ATCTAATAGCGATTTTATCCAATAGATTGTGTACCGCACGGATTGGATGCTAAGAACGGGATTTTGTGAGAGTAAATAGT
TTATTAAGGAGTGATTGCAC

Downstream 100 bases:

>100_bases
TAGATGTTGTTAAATAGAATTTGCGTATTGCGAAGGGGCCTTTTGGTCCCTGTTATTTTCTTACATATTCCTCTCTAGCC
TAAACCACGATAGCGCGATC

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 239

Protein sequence:

>239_residues
MIFALNTVRNPRWLAPLLAFLVMFLVTACGDKEPEQRKAFIDYLQNTVMRSGMKLPTLSEDQKQKFGPYVSDYAILVTFS
QQLSKSVDASLVPAIEQINQIRVAQDYLSKRDALQQSAGALNLLVQQIRTAKAQADSAQAALKLPDDLKVVFNRAFDNIV
TQPANVLIPAVPVVSSFVQDLVQVGDFLQQQGTQVTFNNGGIQFQTPQQAAQYNTMMSNLVAKYPEMMAAQKRVMKVMQ

Sequences:

>Translated_239_residues
MIFALNTVRNPRWLAPLLAFLVMFLVTACGDKEPEQRKAFIDYLQNTVMRSGMKLPTLSEDQKQKFGPYVSDYAILVTFS
QQLSKSVDASLVPAIEQINQIRVAQDYLSKRDALQQSAGALNLLVQQIRTAKAQADSAQAALKLPDDLKVVFNRAFDNIV
TQPANVLIPAVPVVSSFVQDLVQVGDFLQQQGTQVTFNNGGIQFQTPQQAAQYNTMMSNLVAKYPEMMAAQKRVMKVMQ
>Mature_239_residues
MIFALNTVRNPRWLAPLLAFLVMFLVTACGDKEPEQRKAFIDYLQNTVMRSGMKLPTLSEDQKQKFGPYVSDYAILVTFS
QQLSKSVDASLVPAIEQINQIRVAQDYLSKRDALQQSAGALNLLVQQIRTAKAQADSAQAALKLPDDLKVVFNRAFDNIV
TQPANVLIPAVPVVSSFVQDLVQVGDFLQQQGTQVTFNNGGIQFQTPQQAAQYNTMMSNLVAKYPEMMAAQKRVMKVMQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082290, Length=213, Percent_Identity=53.0516431924883, Blast_Score=240, Evalue=7e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021413 [H]

Pfam domain/function: PF11254 DUF3053 [H]

EC number: NA

Molecular weight: Translated: 26604; Mature: 26604

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIFALNTVRNPRWLAPLLAFLVMFLVTACGDKEPEQRKAFIDYLQNTVMRSGMKLPTLSE
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DQKQKFGPYVSDYAILVTFSQQLSKSVDASLVPAIEQINQIRVAQDYLSKRDALQQSAGA
HHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNLLVQQIRTAKAQADSAQAALKLPDDLKVVFNRAFDNIVTQPANVLIPAVPVVSSFVQD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVQVGDFLQQQGTQVTFNNGGIQFQTPQQAAQYNTMMSNLVAKYPEMMAAQKRVMKVMQ
HHHHHHHHHHCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIFALNTVRNPRWLAPLLAFLVMFLVTACGDKEPEQRKAFIDYLQNTVMRSGMKLPTLSE
CEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
DQKQKFGPYVSDYAILVTFSQQLSKSVDASLVPAIEQINQIRVAQDYLSKRDALQQSAGA
HHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LNLLVQQIRTAKAQADSAQAALKLPDDLKVVFNRAFDNIVTQPANVLIPAVPVVSSFVQD
HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
LVQVGDFLQQQGTQVTFNNGGIQFQTPQQAAQYNTMMSNLVAKYPEMMAAQKRVMKVMQ
HHHHHHHHHHCCCEEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]