| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is hsdM [C]
Identifier: 153948702
GI number: 153948702
Start: 3991753
End: 3994344
Strand: Direct
Name: hsdM [C]
Synonym: YpsIP31758_3536
Alternate gene names: 153948702
Gene position: 3991753-3994344 (Clockwise)
Preceding gene: 153949965
Following gene: 153947182
Centisome position: 84.51
GC content: 45.91
Gene sequence:
>2592_bases GTGAATAAACAGCAGCTTGCGGCAAAAATCTGGGAATCCGCCAACCAGATGCGTTCTAAAATTGAAGCCAATGAATACAA AGATTACATACTCGGCTTTATCTTCTACAAGTACCTAAGCGACCAGTTGGTGCAGTTTGTCACCAGACAGGGTATGACGC CCGAAGATATCAAAGCCCTCAATGAAGAAGACGCCGACACCGTTAAATACGTGCAAGGCAACCTGGGCTACTTTATTGCC TACGATAATCTGTTTTCTACCTGGGTTGATTCCACATCCGACTTTGATGAATCTAACGTACGTGATGCGCTCTCAGCCTT TAGCCGTTTGATTTCGCCAACTTACAAAAAACTGTTTGAAGGCATTTTTACCACCTTAGAAACCGGTTTAAGCAAACTGG GTGAAAGTGCGGGCAAACGCACCAAAGCCATCAGCGACTTACTGCACCTGATCAAAAGCATCCCCATGAATGGTAATCAA GGGTATGACGTACTGGGCTACATTTACGAATACCTGCTTGAGAAATTTGCCGCCAATGCAGGTAAAAAAGCCGGTGAGTT TTACACGCCTCATGAAGTCTCAGTACTCATGTCGAACATCATTGCCTACGAGTTAAAACACAAAGATACCATCAAAATTT ACGACCCGACCTCCGGCTCGGGTTCGTTGCTGATCAATATCGGTGAGGCATTCGAGAAATACGCTAAAAACAAAGACAGC ATCACCTATTACGCCCAAGAGTTAAAAGCCAATACCTACAACCTAACCCGTATGAACCTCATCATGCGCGGTATCAAAGC CAGCAACATTAAAACCCGTAATGGCGACACCCTGGAAGACGATTGGCCGTTTTTTGATGATAGCGATCCTCAAGGATCAT ATTACGCCTTGCACGTCGATGCCGTAGTATCCAACCCGCCTTACTCACAAAACTGGGACCCCAGCTTTAAAGACAGCGAT CCACGCTATTCACGTTTTGGCCTGGCCCCTAAAACCAAAGCCGATTTTGCTTTTTTGCTGCACGACCTCTACCACCTAAA ACCCGATGGCATTATGGCCATTGTTCTGCCCCATGGTGTCTTGTTCCGTGGCGGTGAAGAAGGTCAAATTCGCAAGCAAC TCATTGAGCAGAATCACATTGATACTATTATCGGTTTACCGGCCAATATCTTTTTTGGCACCGGCATTCCCACAGTGATT TTGGTACTCAAGCAAAAACGCCAAAACACCGATGTATTAGTGATCGATGCCTCCAAGCACTTTATGAAAGAAGGCAAAAA CAACAAACTGCAAGCCAGTGACATCAAGCGCATCACTGATGCGGTGATTAACCGCGAAAGTATCGATAAGTTCTCGCAAC GGGTGAGCAAACAAACCCTGCGCGACAACGGCTACAATCTCAACATACCGCGCTATGTGGATTCCTCTGCGGCGACACCA AGCTGGGATTTACACGCCACTATGCTCGGCGGCATCCCCAACAGCGAAATTGCCGAGCTACACAATTATTGGCAAGCCTT CCCGCAATTGCACGATACTCTGTTTACGCCAAAATCCGCCGCTTACAGTGAGCTGGCCATTGCCAAACAAGACGTCAACG CCAGTATTAGTGGGCATCCGCAAGTGTTAGCGTTTATCAGCGCCTACAACCAAACCTTTAATGGCTTTGATGATTACCTA AACACCCAGTTAATACAAAACTGGCACAGCGTAAAGCGTAACCAACAAGAGGCGGTATTAAGTACCGAGCTATTTACTCG CTTAGCTCCCATTGCCCTCATCGACAAATACCAGGCTTACCAATTTCTAAACAACCAATGGCAGCTCATCAGCGCCGATT TAGAAATGATGCAAACCGAAGGCTTTGCCGCCGCCAAACAAGTTGATGCCAATATTGTTATAAAGAAAAAAAACGGCCAG GACACTGAAGTGCAAGACGGCTGGAGAGGCCACATACTGCCCTTCGATTTAGTGCAACAAACTTATTTAAGTGATGATTT ACAAGCTCTGGCCGCTAAAGAAACCCGCCTGGCAGAAATCGCCAGCATGCTGGAAGAAATTTTAGAATCCCTAACCGAAG AAGAAAAAGAACAAGATACGGTCAAAGAAAGCCAAGACGGCTTTGCCAATGCCGAATTAAGTAAGGCAGCCAAAGTCTTC TTGAAAGAGCAAAAAGATGCCAAAACTAAATTTGCCGAAGACAGCTATGAAGCCAAAATCATTCGTGCGAACAAATTAAT CGATGAAGAAAAAACCCTGAAAAAAACCGTCAAAGATGCCGCCACTGCCCTGCACTTAAAAACCAAAACAACTATCGAAG CATTAACTGATGAACAAGTGAACAACCTGCTGCACCTTAAATGGATTGCGCCATTAAGCACCGAACTCGCTGCTATGCCA AACGCCGTAATTAGCCAACTCACTAGCCAAGTGCAAGCCCTTGCTGATAAATACGCCGTCACTTACTCGCAAGTGGCCAA TGAGATAAAAAACACCGAGCAAGAACTGGCGCAGATGATGAGCGAGCTAACAGGTAATGAATTTGATATGCAGGGCTTGG CTGAACTCACCCGCTTACTGAAGGGTGAATAA
Upstream 100 bases:
>100_bases ATCAACGTGCCCCCGCTAGCAAGAAGCGCCTATCAGACGTACAATCAAAACCCTAAAATAGCCCTTTTTCGAAAAAGAAT TGCTTTTAACAGGACTTATA
Downstream 100 bases:
>100_bases GATGAGTATGGATAATATGGTACCGGAGATTCGCTTTGAAGGGTTCAGTACAAACTGGCTCAATTTCAATTTAAGTCAGA TTACTGATGTCTATGATGGA
Product: type I restriction-modification system, M subunit
Products: NA
Alternate protein names: M.MpnORFDP [H]
Number of amino acids: Translated: 863; Mature: 863
Protein sequence:
>863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQGNLGYFIA YDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVI LVLKQKRQNTDVLVIDASKHFMKEGKNNKLQASDIKRITDAVINRESIDKFSQRVSKQTLRDNGYNLNIPRYVDSSAATP SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQDVNASISGHPQVLAFISAYNQTFNGFDDYL NTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQ DTEVQDGWRGHILPFDLVQQTYLSDDLQALAAKETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQVNNLLHLKWIAPLSTELAAMP NAVISQLTSQVQALADKYAVTYSQVANEIKNTEQELAQMMSELTGNEFDMQGLAELTRLLKGE
Sequences:
>Translated_863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQGNLGYFIA YDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVI LVLKQKRQNTDVLVIDASKHFMKEGKNNKLQASDIKRITDAVINRESIDKFSQRVSKQTLRDNGYNLNIPRYVDSSAATP SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQDVNASISGHPQVLAFISAYNQTFNGFDDYL NTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQ DTEVQDGWRGHILPFDLVQQTYLSDDLQALAAKETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQVNNLLHLKWIAPLSTELAAMP NAVISQLTSQVQALADKYAVTYSQVANEIKNTEQELAQMMSELTGNEFDMQGLAELTRLLKGE >Mature_863_residues MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKALNEEDADTVKYVQGNLGYFIA YDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFEGIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQ GYDVLGYIYEYLLEKFAANAGKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVDAVVSNPPYSQNWDPSFKDSD PRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGVLFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVI LVLKQKRQNTDVLVIDASKHFMKEGKNNKLQASDIKRITDAVINRESIDKFSQRVSKQTLRDNGYNLNIPRYVDSSAATP SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQDVNASISGHPQVLAFISAYNQTFNGFDDYL NTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAYQFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQ DTEVQDGWRGHILPFDLVQQTYLSDDLQALAAKETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQVNNLLHLKWIAPLSTELAAMP NAVISQLTSQVQALADKYAVTYSQVANEIKNTEQELAQMMSELTGNEFDMQGLAELTRLLKGE
Specific function: Methylation of specific adenine residues; required for both restriction and modification activities [H]
COG id: COG0286
COG function: function code V; Type I restriction-modification system methyltransferase subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the N(4)/N(6)-methyltransferase family [H]
Homologues:
Organism=Escherichia coli, GI1790808, Length=337, Percent_Identity=26.1127596439169, Blast_Score=93, Evalue=9e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR022749 - InterPro: IPR003356 - InterPro: IPR002052 - InterPro: IPR002296 - InterPro: IPR004546 [H]
Pfam domain/function: PF12161 HsdM_N; PF02384 N6_Mtase [H]
EC number: =2.1.1.72 [H]
Molecular weight: Translated: 97315; Mature: 97315
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE CCCCCHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHCCCCC ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVD HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQNWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGV EEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVILVLKQKRQNTDVLVIDASKH EEECCCCCHHHHHHHHHCCCCHHHCCCCHHEECCCHHHHHHHHHHHCCCCCEEEEECCHH FMKEGKNNKLQASDIKRITDAVINRESIDKFSQRVSKQTLRDNGYNLNIPRYVDSSAATP HHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQDVNASISGHP CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH QVLAFISAYNQTFNGFDDYLNTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH QFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQDTEVQDGWRGHILPFDLVQQ HHHCCCCEEHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH TYLSDDLQALAAKETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQV HHHHHHHHHHHCCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHH NNLLHLKWIAPLSTELAAMPNAVISQLTSQVQALADKYAVTYSQVANEIKNTEQELAQMM HCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SELTGNEFDMQGLAELTRLLKGE HHHCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure MNKQQLAAKIWESANQMRSKIEANEYKDYILGFIFYKYLSDQLVQFVTRQGMTPEDIKAL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHC NEEDADTVKYVQGNLGYFIAYDNLFSTWVDSTSDFDESNVRDALSAFSRLISPTYKKLFE CCCCCHHHHHHCCCCCEEEEEHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH GIFTTLETGLSKLGESAGKRTKAISDLLHLIKSIPMNGNQGYDVLGYIYEYLLEKFAANA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC GKKAGEFYTPHEVSVLMSNIIAYELKHKDTIKIYDPTSGSGSLLINIGEAFEKYAKNKDS CCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHCCCCC ITYYAQELKANTYNLTRMNLIMRGIKASNIKTRNGDTLEDDWPFFDDSDPQGSYYALHVD HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEE AVVSNPPYSQNWDPSFKDSDPRYSRFGLAPKTKADFAFLLHDLYHLKPDGIMAIVLPHGV EEECCCCCCCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCE LFRGGEEGQIRKQLIEQNHIDTIIGLPANIFFGTGIPTVILVLKQKRQNTDVLVIDASKH EEECCCCCHHHHHHHHHCCCCHHHCCCCHHEECCCHHHHHHHHHHHCCCCCEEEEECCHH FMKEGKNNKLQASDIKRITDAVINRESIDKFSQRVSKQTLRDNGYNLNIPRYVDSSAATP HHHCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC SWDLHATMLGGIPNSEIAELHNYWQAFPQLHDTLFTPKSAAYSELAIAKQDVNASISGHP CCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH QVLAFISAYNQTFNGFDDYLNTQLIQNWHSVKRNQQEAVLSTELFTRLAPIALIDKYQAY HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH QFLNNQWQLISADLEMMQTEGFAAAKQVDANIVIKKKNGQDTEVQDGWRGHILPFDLVQQ HHHCCCCEEHHHHHHHHHHCCCHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHH TYLSDDLQALAAKETRLAEIASMLEEILESLTEEEKEQDTVKESQDGFANAELSKAAKVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LKEQKDAKTKFAEDSYEAKIIRANKLIDEEKTLKKTVKDAATALHLKTKTTIEALTDEQV HHHHHHHHHHHCCCCCCEEEEHHHHHHCHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHHH NNLLHLKWIAPLSTELAAMPNAVISQLTSQVQALADKYAVTYSQVANEIKNTEQELAQMM HCEEEEEEECCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SELTGNEFDMQGLAELTRLLKGE HHHCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8948633 [H]