Click here to switch to the map view.

The map label for this gene is 153947182

Identifier: 153947182

GI number: 153947182

Start: 3994346

End: 3995605

Strand: Direct

Name: 153947182

Synonym: YpsIP31758_3537

Alternate gene names: NA

Gene position: 3994346-3995605 (Clockwise)

Preceding gene: 153948702

Following gene: 153947414

Centisome position: 84.57

GC content: 37.3

Gene sequence:

>1260_bases
ATGAGTATGGATAATATGGTACCGGAGATTCGCTTTGAAGGGTTCAGTACAAACTGGCTCAATTTCAATTTAAGTCAGAT
TACTGATGTCTATGATGGAACTCATCAAACGCCCGCATATACAAAAAGTGGCGTAATGTTTCTTTCGGCAGAGAATATCA
AGTCTTTAACTTCAACGAAATTTATTTCAGAAGAGGCATTTAAGAAGGAATTTAAGGTATACCCAAAAAAAAATGATGTA
CTAATGACCAGAATAGGCGACGTTGGAACTGCAAACGTTGTTGAAACTGATGATGATAGAGCTTATTACGTGACTCTAGC
ATTATTAAAATATAAAAAGATAAGTCCATATTTTTTAAAAAGTTCAATCGCGTCACCATTTGTTCAAAAAGATATTTGGC
TTCGAACTCTACATATTGCATTCCCTAAAAAGATCAATATGAATGAAATTAAGAAAGTTGCGGTTAACTGCCCACCAGAT
GTTGTTGAGTCTGATAAGATCGGCCAATATTTCAAAAATCTCGATGCACTGATCAACCAGCACCAACAAAAGCATGACAA
ACTCAGCAACATTAAAAAAGCCATGCTGGAAAAGATGTTCCCCAAACCAGGCAAAACCATCCCAGAAATCCGCTTTAAAG
GGTTTAGTGGGGAGTGGGAGGAGATGCCATTTGGAGCTTGCTTTATTAACGTGTCGAACAATACTCTTTCTAGAGCCGAT
CTGAATTATGACGATGGAATGGCAAAAAATATTCACTATGGCGATGTATTAATTAAATTCGGTGAAGTTCTAGATGCAAC
TAATGAGCTTTTGCCTTTTATTACAAATAATGACGTAGCCAATAAGCTAAAACATGCCGCCTTGCGCGATGGTGATATTA
TCATTGCAGATGCTGCTGAAGATAGTATGGTTGGAAAATGCACCGAGCTATTTAATATAGGTGAGCAGTTAGTTCTTTCT
GGATTGCACACAATTGCGGTTAGGCCTACGTTGACTTTTGCTTCTAAATATCTTGGATACTACTTAAATTCATCTTCATA
CCATGATCAGCTTTTGTCATTGATGCAAGGTACAAAAGTATTATCAATATCAAGGACTGCAATACAGAACACAAATATTG
TGTTTCCAAAGAGTGCGGAAGAACAAGTCGAAATAGGCAACTATTTCCAAAAGCTCGACGCACTGATCAACCAGCACCAA
CAACAAATCACCAAACTCAATAACATCAAGCAGGCCTGCTTGAGCAAAATGTTTATATAG

Upstream 100 bases:

>100_bases
ACCGAGCAAGAACTGGCGCAGATGATGAGCGAGCTAACAGGTAATGAATTTGATATGCAGGGCTTGGCTGAACTCACCCG
CTTACTGAAGGGTGAATAAG

Downstream 100 bases:

>100_bases
GGAGTGTTCATGACCACCTTTAAAACCGAAGCGCAATTTGAGCAGGCCTTTATTGAGGTTCTCACCAACAAAGGTTGGGA
ACAGAAGATACTCAAAAACA

Product: type I restriction-modification system, S subunit

Products: NA

Alternate protein names: Restriction System DNA Specificity Subunit; Restriction Endonuclease S Subunit; Restriction System DNA Specificity Domain Protein; Type I R/M System Specificity Subunit; Restriction System DNA Specificity Domain; Specificity Determinant HsdS; Type I Restriction- System S Subunit; Type I Restriction Specificity Protein; Type IC Specificity Subunit; Type I Site-Specific Deoxyribonucleacificity Subunit; Type I Restriction S Subunit; Type I Restriction Endonuclease S Subunit; Type I Restriction- System Specificty Subunit; Restriction- Type I S Subunit; Type I Restriction- System S Protein; HsdS Specificity Protein Of Type I Restriction- System; Type I RM System Specificity Subunit HsdIB; Type I Site-Specific Deoxyribonuclease Restriction Subunit; HsdS Protein; Type I Restriction Specificity Subunit; Type I Restriction- S Subunit; Type I Restriction- System DNA Specificity Subunit; Type I Restriction- System Protein; Type I Restriction- System Subunit S; HsdS-Like Protein Of Type I Restriction- System; Type I Restriction DNA Specificity Domain Protein; Type I Restriction- System Specificity Subunit Protein; Restriction Endonuclease S Subunits-Like Protein; Type-I Specificity Determinant Subunit; Type I Site-Specific Deoxyribonuclease; Type IC HsdS Subunit; Specificity Subunit

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MSMDNMVPEIRFEGFSTNWLNFNLSQITDVYDGTHQTPAYTKSGVMFLSAENIKSLTSTKFISEEAFKKEFKVYPKKNDV
LMTRIGDVGTANVVETDDDRAYYVTLALLKYKKISPYFLKSSIASPFVQKDIWLRTLHIAFPKKINMNEIKKVAVNCPPD
VVESDKIGQYFKNLDALINQHQQKHDKLSNIKKAMLEKMFPKPGKTIPEIRFKGFSGEWEEMPFGACFINVSNNTLSRAD
LNYDDGMAKNIHYGDVLIKFGEVLDATNELLPFITNNDVANKLKHAALRDGDIIIADAAEDSMVGKCTELFNIGEQLVLS
GLHTIAVRPTLTFASKYLGYYLNSSSYHDQLLSLMQGTKVLSISRTAIQNTNIVFPKSAEEQVEIGNYFQKLDALINQHQ
QQITKLNNIKQACLSKMFI

Sequences:

>Translated_419_residues
MSMDNMVPEIRFEGFSTNWLNFNLSQITDVYDGTHQTPAYTKSGVMFLSAENIKSLTSTKFISEEAFKKEFKVYPKKNDV
LMTRIGDVGTANVVETDDDRAYYVTLALLKYKKISPYFLKSSIASPFVQKDIWLRTLHIAFPKKINMNEIKKVAVNCPPD
VVESDKIGQYFKNLDALINQHQQKHDKLSNIKKAMLEKMFPKPGKTIPEIRFKGFSGEWEEMPFGACFINVSNNTLSRAD
LNYDDGMAKNIHYGDVLIKFGEVLDATNELLPFITNNDVANKLKHAALRDGDIIIADAAEDSMVGKCTELFNIGEQLVLS
GLHTIAVRPTLTFASKYLGYYLNSSSYHDQLLSLMQGTKVLSISRTAIQNTNIVFPKSAEEQVEIGNYFQKLDALINQHQ
QQITKLNNIKQACLSKMFI
>Mature_418_residues
SMDNMVPEIRFEGFSTNWLNFNLSQITDVYDGTHQTPAYTKSGVMFLSAENIKSLTSTKFISEEAFKKEFKVYPKKNDVL
MTRIGDVGTANVVETDDDRAYYVTLALLKYKKISPYFLKSSIASPFVQKDIWLRTLHIAFPKKINMNEIKKVAVNCPPDV
VESDKIGQYFKNLDALINQHQQKHDKLSNIKKAMLEKMFPKPGKTIPEIRFKGFSGEWEEMPFGACFINVSNNTLSRADL
NYDDGMAKNIHYGDVLIKFGEVLDATNELLPFITNNDVANKLKHAALRDGDIIIADAAEDSMVGKCTELFNIGEQLVLSG
LHTIAVRPTLTFASKYLGYYLNSSSYHDQLLSLMQGTKVLSISRTAIQNTNIVFPKSAEEQVEIGNYFQKLDALINQHQQ
QITKLNNIKQACLSKMFI

Specific function: Unknown

COG id: COG0732

COG function: function code V; Restriction endonuclease S subunits

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47409; Mature: 47278

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMDNMVPEIRFEGFSTNWLNFNLSQITDVYDGTHQTPAYTKSGVMFLSAENIKSLTSTK
CCCCCCCCCEEECCCCCCEEECCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHH
FISEEAFKKEFKVYPKKNDVLMTRIGDVGTANVVETDDDRAYYVTLALLKYKKISPYFLK
HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCCCEEEEEEEEHHHHCCCHHHHH
SSIASPFVQKDIWLRTLHIAFPKKINMNEIKKVAVNCPPDVVESDKIGQYFKNLDALINQ
HHHCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
HQQKHDKLSNIKKAMLEKMFPKPGKTIPEIRFKGFSGEWEEMPFGACFINVSNNTLSRAD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHCCCCEEEEEEECCCCCEECC
LNYDDGMAKNIHYGDVLIKFGEVLDATNELLPFITNNDVANKLKHAALRDGDIIIADAAE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHCCCCCEEEEECCC
DSMVGKCTELFNIGEQLVLSGLHTIAVRPTLTFASKYLGYYLNSSSYHDQLLSLMQGTKV
CCHHHHHHHHHHHHHHHHHHCHHHEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
LSISRTAIQNTNIVFPKSAEEQVEIGNYFQKLDALINQHQQQITKLNNIKQACLSKMFI
EEEEHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SMDNMVPEIRFEGFSTNWLNFNLSQITDVYDGTHQTPAYTKSGVMFLSAENIKSLTSTK
CCCCCCCCEEECCCCCCEEECCHHHHHHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHHH
FISEEAFKKEFKVYPKKNDVLMTRIGDVGTANVVETDDDRAYYVTLALLKYKKISPYFLK
HHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCEECCCCCEEEEEEEEHHHHCCCHHHHH
SSIASPFVQKDIWLRTLHIAFPKKINMNEIKKVAVNCPPDVVESDKIGQYFKNLDALINQ
HHHCCHHHHHHHHHEEEEEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH
HQQKHDKLSNIKKAMLEKMFPKPGKTIPEIRFKGFSGEWEEMPFGACFINVSNNTLSRAD
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHCCCCEEEEEEECCCCCEECC
LNYDDGMAKNIHYGDVLIKFGEVLDATNELLPFITNNDVANKLKHAALRDGDIIIADAAE
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHCCCCCEEEEECCC
DSMVGKCTELFNIGEQLVLSGLHTIAVRPTLTFASKYLGYYLNSSSYHDQLLSLMQGTKV
CCHHHHHHHHHHHHHHHHHHCHHHEEECCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCEE
LSISRTAIQNTNIVFPKSAEEQVEIGNYFQKLDALINQHQQQITKLNNIKQACLSKMFI
EEEEHHHHCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA