| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is dppD [H]
Identifier: 153948539
GI number: 153948539
Start: 4588557
End: 4589537
Strand: Reverse
Name: dppD [H]
Synonym: YpsIP31758_4072
Alternate gene names: 153948539
Gene position: 4589537-4588557 (Counterclockwise)
Preceding gene: 153948735
Following gene: 153949844
Centisome position: 97.17
GC content: 52.4
Gene sequence:
>981_bases ATGGCACTTTTAAATGTAGATAAATTGTCGGTGCATTTTGGTGACGACGCTGCGCCGTTCAAGGCCGTAGATCGTATCAG TTACAGCATTGATCAAGGACAGGTGGTGGGGATTGTCGGTGAATCCGGCTCCGGTAAATCGGTCAGCTCACTGGCGATCA TGGGGTTGATTGATTATCCCGGAAAGGTGATGGCCGATAAGCTGGAATTTAACGGTCGCGACCTGACCAAAATTTCGGAA AAAGAGCGGCGTCAATTGGTAGGCGCGGAAGTCGCGATGATTTTCCAAGACCCAATGACCAGCCTGAACCCGTGTTACAC CGTTGGTTTTCAGATTATGGAAGCGTTAAAGGTGCATCAGGGGGGCAATCGCAAAACTCGCCATCAGCGGGCGGTAGATT TGTTGACGCTGGTGGGTATCCCTGATCCTGCTTCGCGTCTGGATGTGTATCCACATCAACTCTCCGGTGGGATGAGCCAA CGGGTGATGATCGCCATGGCGATTGCCTGTCGGCCTAAATTGCTCATTGCCGATGAGCCAACGACCGCGCTGGATGTGAC AATTCAGGCGCAGATTATTGAATTACTCTTGGAATTACAGCGGCGTGAAAATATGGCGTTGCTGCTGATTACCCATGATC TGGCACTGGTTGCAGAAGCGGCCCATCAAATTATTGTGATGTATGCGGGTCAGGTAGTTGAAACCGGCAAGGCGGCGGAA ATTTTCCGTGCGCCACGCCATCCGTACACACAAGCATTGCTACGCGCATTACCGGAGTTTGCTCAGGATAAAGCGCGGTT AGCATCCTTACCGGGTGTGGTACCGGGTAAATATGACCGACCAGAAGGCTGTCTGCTTAACCCGCGTTGCCCGTATGCCA CTGATCGTTGTCGCGATGAAGAGCCGGAGTTACTGGGCACACCAGGGCGTCAGGTTAAATGCCATACACCGCTTAATGAT GCGGGGAGGCCATCCCTATGA
Upstream 100 bases:
>100_bases GGTGTGGCGATCCTGCTAACAGTTCTGGCGTTTAACCTGATGGGGGACGGCCTGCGTGATGCTCTCGACCCCAAACTCAA GCAGTAACAGAGGTAGAGAG
Downstream 100 bases:
>100_bases ATTCGAACACTGAAGCGGCGCATAAAGTAAACATGATGGGTGAAACCGAAATAAAGGGAGAAAGTTTGCCAGCAGAGACG GGTAAAAAGCCGTTATTACA
Product: dipeptide ABC transporter ATP-binding protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MALLNVDKLSVHFGDDAAPFKAVDRISYSIDQGQVVGIVGESGSGKSVSSLAIMGLIDYPGKVMADKLEFNGRDLTKISE KERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRKTRHQRAVDLLTLVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQRRENMALLLITHDLALVAEAAHQIIVMYAGQVVETGKAAE IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPEGCLLNPRCPYATDRCRDEEPELLGTPGRQVKCHTPLND AGRPSL
Sequences:
>Translated_326_residues MALLNVDKLSVHFGDDAAPFKAVDRISYSIDQGQVVGIVGESGSGKSVSSLAIMGLIDYPGKVMADKLEFNGRDLTKISE KERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRKTRHQRAVDLLTLVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQRRENMALLLITHDLALVAEAAHQIIVMYAGQVVETGKAAE IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPEGCLLNPRCPYATDRCRDEEPELLGTPGRQVKCHTPLND AGRPSL >Mature_325_residues ALLNVDKLSVHFGDDAAPFKAVDRISYSIDQGQVVGIVGESGSGKSVSSLAIMGLIDYPGKVMADKLEFNGRDLTKISEK ERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQGGNRKTRHQRAVDLLTLVGIPDPASRLDVYPHQLSGGMSQR VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQRRENMALLLITHDLALVAEAAHQIIVMYAGQVVETGKAAEI FRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPEGCLLNPRCPYATDRCRDEEPELLGTPGRQVKCHTPLNDA GRPSL
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI148612844, Length=225, Percent_Identity=28, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI255708477, Length=225, Percent_Identity=28, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI9961252, Length=254, Percent_Identity=28.3464566929134, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI4505771, Length=254, Percent_Identity=28.3464566929134, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI9961250, Length=254, Percent_Identity=28.3464566929134, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI11967969, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=7e-12, Organism=Homo sapiens, GI9665248, Length=220, Percent_Identity=27.7272727272727, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI21536378, Length=233, Percent_Identity=30.4721030042918, Blast_Score=66, Evalue=4e-11, Organism=Escherichia coli, GI1789963, Length=327, Percent_Identity=87.7675840978593, Blast_Score=590, Evalue=1e-170, Organism=Escherichia coli, GI48994883, Length=319, Percent_Identity=45.7680250783699, Blast_Score=293, Evalue=1e-80, Organism=Escherichia coli, GI1787548, Length=327, Percent_Identity=43.4250764525994, Blast_Score=272, Evalue=3e-74, Organism=Escherichia coli, GI145693107, Length=268, Percent_Identity=50.3731343283582, Blast_Score=261, Evalue=5e-71, Organism=Escherichia coli, GI1787759, Length=298, Percent_Identity=42.9530201342282, Blast_Score=254, Evalue=6e-69, Organism=Escherichia coli, GI1788506, Length=258, Percent_Identity=47.2868217054264, Blast_Score=231, Evalue=5e-62, Organism=Escherichia coli, GI1787500, Length=327, Percent_Identity=38.5321100917431, Blast_Score=209, Evalue=2e-55, Organism=Escherichia coli, GI1789962, Length=298, Percent_Identity=36.5771812080537, Blast_Score=196, Evalue=1e-51, Organism=Escherichia coli, GI1787758, Length=308, Percent_Identity=34.0909090909091, Blast_Score=178, Evalue=4e-46, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=35.6862745098039, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1789890, Length=235, Percent_Identity=34.8936170212766, Blast_Score=141, Evalue=4e-35, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=32.9501915708812, Blast_Score=140, Evalue=1e-34, Organism=Escherichia coli, GI1789891, Length=245, Percent_Identity=35.1020408163265, Blast_Score=130, Evalue=1e-31, Organism=Escherichia coli, GI1786398, Length=286, Percent_Identity=32.1678321678322, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI1789032, Length=232, Percent_Identity=34.051724137931, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1787029, Length=254, Percent_Identity=31.8897637795276, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI87081834, Length=226, Percent_Identity=33.6283185840708, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI1788225, Length=234, Percent_Identity=32.4786324786325, Blast_Score=106, Evalue=3e-24, Organism=Escherichia coli, GI1789672, Length=254, Percent_Identity=29.9212598425197, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=30.188679245283, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1787089, Length=244, Percent_Identity=33.1967213114754, Blast_Score=95, Evalue=8e-21, Organism=Escherichia coli, GI1787712, Length=284, Percent_Identity=28.169014084507, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790162, Length=253, Percent_Identity=26.8774703557312, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788761, Length=228, Percent_Identity=29.3859649122807, Blast_Score=93, Evalue=3e-20, Organism=Escherichia coli, GI87081709, Length=252, Percent_Identity=28.1746031746032, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1786703, Length=218, Percent_Identity=32.1100917431193, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787370, Length=242, Percent_Identity=28.099173553719, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1788644, Length=180, Percent_Identity=31.1111111111111, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1788450, Length=234, Percent_Identity=26.9230769230769, Blast_Score=91, Evalue=2e-19, Organism=Escherichia coli, GI1787105, Length=268, Percent_Identity=31.3432835820896, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=31.0185185185185, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1786872, Length=222, Percent_Identity=29.7297297297297, Blast_Score=83, Evalue=3e-17, Organism=Escherichia coli, GI1786563, Length=223, Percent_Identity=29.1479820627803, Blast_Score=81, Evalue=9e-17, Organism=Escherichia coli, GI87082267, Length=231, Percent_Identity=27.2727272727273, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1790467, Length=229, Percent_Identity=27.5109170305677, Blast_Score=78, Evalue=7e-16, Organism=Escherichia coli, GI1787792, Length=218, Percent_Identity=26.605504587156, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI1786345, Length=224, Percent_Identity=26.7857142857143, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=26.7206477732794, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=25.5230125523013, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787164, Length=231, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1786253, Length=223, Percent_Identity=27.8026905829596, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789991, Length=218, Percent_Identity=25.2293577981651, Blast_Score=69, Evalue=4e-13, Organism=Escherichia coli, GI48995001, Length=230, Percent_Identity=27.8260869565217, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1788165, Length=231, Percent_Identity=26.4069264069264, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1786319, Length=218, Percent_Identity=28.4403669724771, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1786698, Length=217, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1787112, Length=90, Percent_Identity=43.3333333333333, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI1790190, Length=224, Percent_Identity=25.4464285714286, Blast_Score=64, Evalue=2e-11, Organism=Caenorhabditis elegans, GI212646699, Length=222, Percent_Identity=28.8288288288288, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193208177, Length=229, Percent_Identity=27.0742358078603, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI115534520, Length=238, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI193209708, Length=229, Percent_Identity=27.9475982532751, Blast_Score=70, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211017, Length=259, Percent_Identity=27.4131274131274, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71996809, Length=259, Percent_Identity=27.4131274131274, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193211015, Length=259, Percent_Identity=27.4131274131274, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193202349, Length=236, Percent_Identity=29.2372881355932, Blast_Score=68, Evalue=5e-12, Organism=Caenorhabditis elegans, GI25146777, Length=239, Percent_Identity=28.0334728033473, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71983510, Length=236, Percent_Identity=23.728813559322, Blast_Score=66, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71983523, Length=236, Percent_Identity=23.728813559322, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI71983516, Length=236, Percent_Identity=23.728813559322, Blast_Score=65, Evalue=3e-11, Organism=Caenorhabditis elegans, GI17569143, Length=240, Percent_Identity=27.9166666666667, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=241, Percent_Identity=28.2157676348548, Blast_Score=77, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6322640, Length=218, Percent_Identity=32.1100917431193, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323217, Length=232, Percent_Identity=28.448275862069, Blast_Score=63, Evalue=8e-11, Organism=Drosophila melanogaster, GI24641565, Length=223, Percent_Identity=32.2869955156951, Blast_Score=75, Evalue=4e-14, Organism=Drosophila melanogaster, GI28574150, Length=221, Percent_Identity=25.7918552036199, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI116007328, Length=221, Percent_Identity=25.7918552036199, Blast_Score=69, Evalue=6e-12, Organism=Drosophila melanogaster, GI28574533, Length=236, Percent_Identity=25.4237288135593, Blast_Score=67, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 35652; Mature: 35521
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALLNVDKLSVHFGDDAAPFKAVDRISYSIDQGQVVGIVGESGSGKSVSSLAIMGLIDYP CCEEEEEEEEEEECCCCCHHHHHHHHHEECCCCEEEEEEECCCCCCCHHHEEEEEEECCC GKVMADKLEFNGRDLTKISEKERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQ CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHC GGNRKTRHQRAVDLLTLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCCCHHHHHHHHHHHEECCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLELQRRENMALLLITHDLALVAEAAHQIIVMYAGQVVETGKAAE CCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHEEEEECCCHHCCCCHHH IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPEGCLLNPRCPYATDRCRDE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC EPELLGTPGRQVKCHTPLNDAGRPSL CCCEECCCCCEEEEECCCCCCCCCCC >Mature Secondary Structure ALLNVDKLSVHFGDDAAPFKAVDRISYSIDQGQVVGIVGESGSGKSVSSLAIMGLIDYP CEEEEEEEEEEECCCCCHHHHHHHHHEECCCCEEEEEEECCCCCCCHHHEEEEEEECCC GKVMADKLEFNGRDLTKISEKERRQLVGAEVAMIFQDPMTSLNPCYTVGFQIMEALKVHQ CHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHHHHHHHHHHHC GGNRKTRHQRAVDLLTLVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEP CCCCCHHHHHHHHHHHEECCCCCHHHHCCCHHHHCCCCHHHHHHHHHHHCCCEEEEECCC TTALDVTIQAQIIELLLELQRRENMALLLITHDLALVAEAAHQIIVMYAGQVVETGKAAE CCEEEEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHEEEEECCCHHCCCCHHH IFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPGKYDRPEGCLLNPRCPYATDRCRDE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC EPELLGTPGRQVKCHTPLNDAGRPSL CCCEECCCCCEEEEECCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]