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The map label for this gene is ybjS [H]

Identifier: 153948489

GI number: 153948489

Start: 2979529

End: 2980536

Strand: Direct

Name: ybjS [H]

Synonym: YpsIP31758_2622

Alternate gene names: 153948489

Gene position: 2979529-2980536 (Clockwise)

Preceding gene: 153948112

Following gene: 153949231

Centisome position: 63.08

GC content: 51.59

Gene sequence:

>1008_bases
ATGAAGGTATTGGTTACCGGCGCAACCAGTGGATTAGGCCGAAATGCGGTTGAATATCTCCGTCGTCAGGAGATCAGTGT
TATCGCCACTGGTCGTAATCAGGCGATGGGCGCGTTATTGACAAAACTGGGGGCTAAATTCATTCATGCTGACCTGACGG
ATCTGGTTTCCTCACAGGCAAAAGCCATGCTGGCGGATGTCGATACGCTGTGGCATTGCTCGAGCTTTACCTCACCGTGG
GGGACAGAGCAGGCTTTTGCGTTGGCAAATGTGCGCGCGACGCGACGCCTTGGAGAATGGGCAGCAGCTTATGGCGTAGA
GAATTTCATTCATATCTCCTCACCCGCCATTTATTTCGATTACCACCATCATCGCAATATTCAGGAAGATTTCCGGCCCG
TGCGCTTTGCCAATGAATTCGCTCGCAGTAAAGCCGCCGGTGAAGAGGTGATCAAACTGCTGGCGCTGTCCAATCCACAA
ACACATTTTACTATTCTGCGCCCACAGGGGTTATTCGGCCCGCATGATAAAGTGATGTTGCCCCGCTTGCTACATATGAT
TAAACATTACGGTACCCTGCTGCTGCCCCGTGGCGGTGACGCACTGGTGGATATGACCTATCTGGAAAACGCCGTACATG
CGATGTGGCTTGCCACCCAAAGCCAAAAGACCCTTTCTGGCCGCGCTTATAATATTACCAACCAGCAACCCCGCCCTCTG
CGCACCATCGTACAACAGCTACTGGACGCGTTGGATATGAAATGTCGAATTCGCTCAGTGCCTTATCCCATGATGGATAT
CATGGCCAGGGCAATGGAGAAAATGAGCAATAAAGCAGAAAAAGAGCCGGTGTTAACACACTATGCGGTGGCTAAACTCA
ATTTTGATCTCACACTGGATACCCTCCGTGCCGAGCAAGAGTTGGGCTATCGCCCAATCATCTCACTGGATGAAGGTATT
CTCCGCACCGCCCGCTGGCTGAAAGAACACGGTAAGTTTCGCGGCTAA

Upstream 100 bases:

>100_bases
ATTGCATAGCGCATCATTTCACGGAAGAATGGCATCTTATTTGCTCAGCGAATAGTTTCAGGCGCTAGCATTTTGATTTT
GGGTGGGAATCGAATTCGTT

Downstream 100 bases:

>100_bases
TGGGTTATTAGGTTATCTTGTAACTCGTCGGTTATCTTATAACTCGTCAGTTATCTGCCAGCCGCCATAACAGATTACTT
TACCTAAGGTCATCATATGA

Product: NAD-dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MKVLVTGATSGLGRNAVEYLRRQEISVIATGRNQAMGALLTKLGAKFIHADLTDLVSSQAKAMLADVDTLWHCSSFTSPW
GTEQAFALANVRATRRLGEWAAAYGVENFIHISSPAIYFDYHHHRNIQEDFRPVRFANEFARSKAAGEEVIKLLALSNPQ
THFTILRPQGLFGPHDKVMLPRLLHMIKHYGTLLLPRGGDALVDMTYLENAVHAMWLATQSQKTLSGRAYNITNQQPRPL
RTIVQQLLDALDMKCRIRSVPYPMMDIMARAMEKMSNKAEKEPVLTHYAVAKLNFDLTLDTLRAEQELGYRPIISLDEGI
LRTARWLKEHGKFRG

Sequences:

>Translated_335_residues
MKVLVTGATSGLGRNAVEYLRRQEISVIATGRNQAMGALLTKLGAKFIHADLTDLVSSQAKAMLADVDTLWHCSSFTSPW
GTEQAFALANVRATRRLGEWAAAYGVENFIHISSPAIYFDYHHHRNIQEDFRPVRFANEFARSKAAGEEVIKLLALSNPQ
THFTILRPQGLFGPHDKVMLPRLLHMIKHYGTLLLPRGGDALVDMTYLENAVHAMWLATQSQKTLSGRAYNITNQQPRPL
RTIVQQLLDALDMKCRIRSVPYPMMDIMARAMEKMSNKAEKEPVLTHYAVAKLNFDLTLDTLRAEQELGYRPIISLDEGI
LRTARWLKEHGKFRG
>Mature_335_residues
MKVLVTGATSGLGRNAVEYLRRQEISVIATGRNQAMGALLTKLGAKFIHADLTDLVSSQAKAMLADVDTLWHCSSFTSPW
GTEQAFALANVRATRRLGEWAAAYGVENFIHISSPAIYFDYHHHRNIQEDFRPVRFANEFARSKAAGEEVIKLLALSNPQ
THFTILRPQGLFGPHDKVMLPRLLHMIKHYGTLLLPRGGDALVDMTYLENAVHAMWLATQSQKTLSGRAYNITNQQPRPL
RTIVQQLLDALDMKCRIRSVPYPMMDIMARAMEKMSNKAEKEPVLTHYAVAKLNFDLTLDTLRAEQELGYRPIISLDEGI
LRTARWLKEHGKFRG

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI193211614, Length=341, Percent_Identity=26.099706744868, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI8393516, Length=341, Percent_Identity=26.099706744868, Blast_Score=110, Evalue=2e-24,
Organism=Homo sapiens, GI239745448, Length=335, Percent_Identity=25.9701492537313, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310132178, Length=335, Percent_Identity=25.9701492537313, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI310113012, Length=335, Percent_Identity=25.9701492537313, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87081792, Length=335, Percent_Identity=72.8358208955224, Blast_Score=525, Evalue=1e-150,
Organism=Caenorhabditis elegans, GI17509709, Length=278, Percent_Identity=24.4604316546763, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6321437, Length=294, Percent_Identity=24.8299319727891, Blast_Score=83, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 37793; Mature: 37793

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVTGATSGLGRNAVEYLRRQEISVIATGRNQAMGALLTKLGAKFIHADLTDLVSSQA
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAMLADVDTLWHCSSFTSPWGTEQAFALANVRATRRLGEWAAAYGVENFIHISSPAIYFD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCEEEEE
YHHHRNIQEDFRPVRFANEFARSKAAGEEVIKLLALSNPQTHFTILRPQGLFGPHDKVML
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHH
PRLLHMIKHYGTLLLPRGGDALVDMTYLENAVHAMWLATQSQKTLSGRAYNITNQQPRPL
HHHHHHHHHCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCCCCHH
RTIVQQLLDALDMKCRIRSVPYPMMDIMARAMEKMSNKAEKEPVLTHYAVAKLNFDLTLD
HHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEEEEHH
TLRAEQELGYRPIISLDEGILRTARWLKEHGKFRG
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKVLVTGATSGLGRNAVEYLRRQEISVIATGRNQAMGALLTKLGAKFIHADLTDLVSSQA
CEEEEECCCCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KAMLADVDTLWHCSSFTSPWGTEQAFALANVRATRRLGEWAAAYGVENFIHISSPAIYFD
HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHEEEECCCEEEEE
YHHHRNIQEDFRPVRFANEFARSKAAGEEVIKLLALSNPQTHFTILRPQGLFGPHDKVML
CHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHH
PRLLHMIKHYGTLLLPRGGDALVDMTYLENAVHAMWLATQSQKTLSGRAYNITNQQPRPL
HHHHHHHHHCCEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCHHHCCCEEECCCCCCCHH
RTIVQQLLDALDMKCRIRSVPYPMMDIMARAMEKMSNKAEKEPVLTHYAVAKLNFDLTLD
HHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHEEEEEEEEHH
TLRAEQELGYRPIISLDEGILRTARWLKEHGKFRG
HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]