Click here to switch to the map view.

The map label for this gene is ybjT [H]

Identifier: 153948112

GI number: 153948112

Start: 2977939

End: 2979429

Strand: Direct

Name: ybjT [H]

Synonym: YpsIP31758_2621

Alternate gene names: 153948112

Gene position: 2977939-2979429 (Clockwise)

Preceding gene: 153947812

Following gene: 153948489

Centisome position: 63.05

GC content: 52.65

Gene sequence:

>1491_bases
ATGACACCACAACGGATATTAGTATTAGGTGCCAGTGGCTATATTGGCCAACATTTGGTCCCCTTGCTAAGCCAGCAAGG
CCATCAAGTCACGGCTGCTGGCCGCCGTATCGAGTGGCTGAAAGAGCAGGCGTGGCCAAACGTTAACTGCTGCTTTGTCG
ATCTTTATCAGCCCGCAACCCTCAATGCCGCGTTGCAAGATATTGATGTACTGTATTATCTGGTACATGGCATGGGTGAC
GGCCAAGATTTGATTGAACAGGAACGTCTAGCCGCCAGCAATATGAAGAACGCCCTACAGCCATTGGGAACAGCGCAAAC
CTCATCCGTTAAGCAGATCATTTATCTCGGTGCATTACAGCCGGGAGATAACAGTTCTTCGCACCTGATCGCCCGCAAAT
TAACGGGCGATATCCTCCGTCAAAGCGGTATCCCGGTCACTGAGTTGCGCGCCAGCATTATTGTCGGCCCCGGTTCTGCT
GCCTTTGAAGTGATGCGCGACATGGTTTATAACCTGCCCATTCTGACACCGCCCCGCTGGGTACGCTCTAAATCGTCACC
CGTCGCACTGGATAATCTCTTGGTTTATCTGACCGAGCTACTCAATCATCCAACGGAAGAAAACCGAATCTGGGATGTCG
CCGGGCCAGAATATATCAGCTACCAAACGATGTTTGAGCGGTTTATTGCCATCAGCGGCAAACGTCGCTGGCTGATCCCG
ATCCCCCTGCCAACCCGGTTTATCTCGGTCTATTTCATTAATATGATCACCTCGGTGCCAACCTCAATTGCCAGCGCACT
GATCGAAGGCCTAAACCATGATTTACCGGCTGATGGCCGCGCCTTACAGGCACTGATCCCGCAAAAATTAATCCGTTTTG
AGGATGCAGTCAAAGAGACACTGCGCCGCGAGGATGAGGTCGTCGACTCTGCTGACTGGGGTTATGACCCAGAGGCCCGC
GCACGCTGGCGGCCAGGTTACGGCTTTTACCCTAAGCAGGCCGGTTGCCAACGCTCAACAACCGCGTCCAGTGAGGCATT
GTGGCATGTGGTGCAACAAATCGGTGGCAAAGAAGGCTATTTCTACGGCAACCCATTGTGGAAAATCCGTGCCAGGATGG
ACGATATGATTGGCGGTGGTGTGGTGTATGGCCGCCCTGAACGGGAAACCTTGGAATTGGGTGATCTCATTGATGGCTGG
AAAGTCATCACCGTCAAACCATTACGCCAGTTGGCATTGATGTTTGGTATGAAAGCACCGGGTTTAGGCCGCCTGACCTT
TACGATTAAAGACTTGGGCGGTTGCCGCAGCTTAGATGTCCGCGCGTGGTGGCATCCCGCGGGTTTCAGCGGATTACTCT
ACTGGTTTGTCATGATGCCAGCACATCTGTTTATTTTTCGCGGAATGGCAAGACGTATTACTGCGCTGGCAGAACACGAT
GACCGTGAACGTGATGCACGGGCAAAAAATAGCGCGGGCTCAAAGCAATGA

Upstream 100 bases:

>100_bases
CCGGGCCGCTCACCCGCCTGATTACTCACCTTAACGTGAGCCGAAAAGATCTGGAAAAAGTCGTCGCGCTGTGGCGTGAA
TTTATTGCCGAGCAACATTC

Downstream 100 bases:

>100_bases
TTGCATAGCGCATCATTTCACGGAAGAATGGCATCTTATTTGCTCAGCGAATAGTTTCAGGCGCTAGCATTTTGATTTTG
GGTGGGAATCGAATTCGTTA

Product: NAD dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 496; Mature: 495

Protein sequence:

>496_residues
MTPQRILVLGASGYIGQHLVPLLSQQGHQVTAAGRRIEWLKEQAWPNVNCCFVDLYQPATLNAALQDIDVLYYLVHGMGD
GQDLIEQERLAASNMKNALQPLGTAQTSSVKQIIYLGALQPGDNSSSHLIARKLTGDILRQSGIPVTELRASIIVGPGSA
AFEVMRDMVYNLPILTPPRWVRSKSSPVALDNLLVYLTELLNHPTEENRIWDVAGPEYISYQTMFERFIAISGKRRWLIP
IPLPTRFISVYFINMITSVPTSIASALIEGLNHDLPADGRALQALIPQKLIRFEDAVKETLRREDEVVDSADWGYDPEAR
ARWRPGYGFYPKQAGCQRSTTASSEALWHVVQQIGGKEGYFYGNPLWKIRARMDDMIGGGVVYGRPERETLELGDLIDGW
KVITVKPLRQLALMFGMKAPGLGRLTFTIKDLGGCRSLDVRAWWHPAGFSGLLYWFVMMPAHLFIFRGMARRITALAEHD
DRERDARAKNSAGSKQ

Sequences:

>Translated_496_residues
MTPQRILVLGASGYIGQHLVPLLSQQGHQVTAAGRRIEWLKEQAWPNVNCCFVDLYQPATLNAALQDIDVLYYLVHGMGD
GQDLIEQERLAASNMKNALQPLGTAQTSSVKQIIYLGALQPGDNSSSHLIARKLTGDILRQSGIPVTELRASIIVGPGSA
AFEVMRDMVYNLPILTPPRWVRSKSSPVALDNLLVYLTELLNHPTEENRIWDVAGPEYISYQTMFERFIAISGKRRWLIP
IPLPTRFISVYFINMITSVPTSIASALIEGLNHDLPADGRALQALIPQKLIRFEDAVKETLRREDEVVDSADWGYDPEAR
ARWRPGYGFYPKQAGCQRSTTASSEALWHVVQQIGGKEGYFYGNPLWKIRARMDDMIGGGVVYGRPERETLELGDLIDGW
KVITVKPLRQLALMFGMKAPGLGRLTFTIKDLGGCRSLDVRAWWHPAGFSGLLYWFVMMPAHLFIFRGMARRITALAEHD
DRERDARAKNSAGSKQ
>Mature_495_residues
TPQRILVLGASGYIGQHLVPLLSQQGHQVTAAGRRIEWLKEQAWPNVNCCFVDLYQPATLNAALQDIDVLYYLVHGMGDG
QDLIEQERLAASNMKNALQPLGTAQTSSVKQIIYLGALQPGDNSSSHLIARKLTGDILRQSGIPVTELRASIIVGPGSAA
FEVMRDMVYNLPILTPPRWVRSKSSPVALDNLLVYLTELLNHPTEENRIWDVAGPEYISYQTMFERFIAISGKRRWLIPI
PLPTRFISVYFINMITSVPTSIASALIEGLNHDLPADGRALQALIPQKLIRFEDAVKETLRREDEVVDSADWGYDPEARA
RWRPGYGFYPKQAGCQRSTTASSEALWHVVQQIGGKEGYFYGNPLWKIRARMDDMIGGGVVYGRPERETLELGDLIDGWK
VITVKPLRQLALMFGMKAPGLGRLTFTIKDLGGCRSLDVRAWWHPAGFSGLLYWFVMMPAHLFIFRGMARRITALAEHDD
RERDARAKNSAGSKQ

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081793, Length=478, Percent_Identity=62.3430962343096, Blast_Score=612, Evalue=1e-176,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021295
- InterPro:   IPR001509
- InterPro:   IPR016040 [H]

Pfam domain/function: PF11066 DUF2867; PF01370 Epimerase [H]

EC number: NA

Molecular weight: Translated: 55528; Mature: 55397

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPQRILVLGASGYIGQHLVPLLSQQGHQVTAAGRRIEWLKEQAWPNVNCCFVDLYQPAT
CCCCEEEEEECCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCH
LNAALQDIDVLYYLVHGMGDGQDLIEQERLAASNMKNALQPLGTAQTSSVKQIIYLGALQ
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCC
PGDNSSSHLIARKLTGDILRQSGIPVTELRASIIVGPGSAAFEVMRDMVYNLPILTPPRW
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCCHH
VRSKSSPVALDNLLVYLTELLNHPTEENRIWDVAGPEYISYQTMFERFIAISGKRRWLIP
HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
IPLPTRFISVYFINMITSVPTSIASALIEGLNHDLPADGRALQALIPQKLIRFEDAVKET
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LRREDEVVDSADWGYDPEARARWRPGYGFYPKQAGCQRSTTASSEALWHVVQQIGGKEGY
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
FYGNPLWKIRARMDDMIGGGVVYGRPERETLELGDLIDGWKVITVKPLRQLALMFGMKAP
EECCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCC
GLGRLTFTIKDLGGCRSLDVRAWWHPAGFSGLLYWFVMMPAHLFIFRGMARRITALAEHD
CCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRERDARAKNSAGSKQ
CHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TPQRILVLGASGYIGQHLVPLLSQQGHQVTAAGRRIEWLKEQAWPNVNCCFVDLYQPAT
CCCEEEEEECCCCHHHHHHHHHHCCCCEEEHHHHHHHHHHHHCCCCCCEEEEEECCCCH
LNAALQDIDVLYYLVHGMGDGQDLIEQERLAASNMKNALQPLGTAQTSSVKQIIYLGALQ
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCC
PGDNSSSHLIARKLTGDILRQSGIPVTELRASIIVGPGSAAFEVMRDMVYNLPILTPPRW
CCCCCCCHHHHHHHHHHHHHHCCCCHHHHCEEEEECCCHHHHHHHHHHHHCCCCCCCCHH
VRSKSSPVALDNLLVYLTELLNHPTEENRIWDVAGPEYISYQTMFERFIAISGKRRWLIP
HCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
IPLPTRFISVYFINMITSVPTSIASALIEGLNHDLPADGRALQALIPQKLIRFEDAVKET
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
LRREDEVVDSADWGYDPEARARWRPGYGFYPKQAGCQRSTTASSEALWHVVQQIGGKEGY
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE
FYGNPLWKIRARMDDMIGGGVVYGRPERETLELGDLIDGWKVITVKPLRQLALMFGMKAP
EECCCHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCC
GLGRLTFTIKDLGGCRSLDVRAWWHPAGFSGLLYWFVMMPAHLFIFRGMARRITALAEHD
CCCEEEEEEECCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DRERDARAKNSAGSKQ
CHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]