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The map label for this gene is flgD [H]

Identifier: 153948005

GI number: 153948005

Start: 749359

End: 750015

Strand: Direct

Name: flgD [H]

Synonym: YpsIP31758_0641

Alternate gene names: 153948005

Gene position: 749359-750015 (Clockwise)

Preceding gene: 153949008

Following gene: 153948570

Centisome position: 15.87

GC content: 51.6

Gene sequence:

>657_bases
ATGCAGATTAATGAAAGCAGAAATTCAGCCAATGTTGGCAATCAATCCCTAGCACCTGAAGGTGGCCTGCCGGGAGGGGA
GCAGTTAAATAACCAATTTATGACCTTGTTGGTGGCACAGATTAAGAATCAAGACCCACTGAACCCGGCAGATGGCACCG
AGTTTGTCAGCCAAATGGCGCAACTCTCGCAGGTACAAGCCACGGAGAACATGGCAAAGCTGCTCAAGAGCAATACTGTT
CAGATGGCGAAAATGCAGACCATGGCAACGGCCAATTTGGTCGGGCAGCAGGTGATGGTTGAGAGTAATGAAATGACCTT
AGGTAAAGACCGTGTTGCCGGACGCTTAACGCTGAAACAGCCCGCCCCGACGCTGTTATTGCACATTACTGACATGTTGG
GCCAAAAAAAGGTTATCGATTTGGGTAAACAACCGGCGGGCCCGGTGAATTTCACTCTTGACCCGGCAGCGGCCAAGCTC
CAACCCGGCCAATACCAACTGAGTGCCGTCAGTGGCAGTGGGGAAGAACTGATTCCGCTGGAAGTAGCAGGCAAAGTGAA
CAACGTGCGTATTTCACCACAAGGTGGTGCACCGCAACTGAATATTGCCGGCCTTGGCGAGGTTTCATACAGCCAAATCA
CACAATTCGGGGCCTAG

Upstream 100 bases:

>100_bases
ACATGATGTCAGCATCGCGCAGCTTTGAGACCAATGTTGAAGTATTGAACAGTGTGAAAAGCATGCAGCAGAGTGTGTTA
AAGCTTGGAGAGCGCTAACT

Downstream 100 bases:

>100_bases
CCCGCACGGTCAATATCACCCTATTAATCCATCTTATTTATACGGAAATATGTTATGAGTTTTAGTATCGCTAATACCGC
ATTGAATGCACATACCGAAC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MQINESRNSANVGNQSLAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTV
QMAKMQTMATANLVGQQVMVESNEMTLGKDRVAGRLTLKQPAPTLLLHITDMLGQKKVIDLGKQPAGPVNFTLDPAAAKL
QPGQYQLSAVSGSGEELIPLEVAGKVNNVRISPQGGAPQLNIAGLGEVSYSQITQFGA

Sequences:

>Translated_218_residues
MQINESRNSANVGNQSLAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTV
QMAKMQTMATANLVGQQVMVESNEMTLGKDRVAGRLTLKQPAPTLLLHITDMLGQKKVIDLGKQPAGPVNFTLDPAAAKL
QPGQYQLSAVSGSGEELIPLEVAGKVNNVRISPQGGAPQLNIAGLGEVSYSQITQFGA
>Mature_218_residues
MQINESRNSANVGNQSLAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMAQLSQVQATENMAKLLKSNTV
QMAKMQTMATANLVGQQVMVESNEMTLGKDRVAGRLTLKQPAPTLLLHITDMLGQKKVIDLGKQPAGPVNFTLDPAAAKL
QPGQYQLSAVSGSGEELIPLEVAGKVNNVRISPQGGAPQLNIAGLGEVSYSQITQFGA

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=170, Percent_Identity=34.1176470588235, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23048; Mature: 23048

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQINESRNSANVGNQSLAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVESNEMTLGKDRVAGRLTLKQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCEECCCCCCCEEEEECC
PAPTLLLHITDMLGQKKVIDLGKQPAGPVNFTLDPAAAKLQPGQYQLSAVSGSGEELIPL
CCCHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCHHHHCCCCCEEEEEECCCCCEEEEE
EVAGKVNNVRISPQGGAPQLNIAGLGEVSYSQITQFGA
EECCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHCCC
>Mature Secondary Structure
MQINESRNSANVGNQSLAPEGGLPGGEQLNNQFMTLLVAQIKNQDPLNPADGTEFVSQMA
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
QLSQVQATENMAKLLKSNTVQMAKMQTMATANLVGQQVMVESNEMTLGKDRVAGRLTLKQ
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEEECCCEECCCCCCCEEEEECC
PAPTLLLHITDMLGQKKVIDLGKQPAGPVNFTLDPAAAKLQPGQYQLSAVSGSGEELIPL
CCCHHHHHHHHHHCCHHHHHCCCCCCCCCEEEECCHHHHCCCCCEEEEEECCCCCEEEEE
EVAGKVNNVRISPQGGAPQLNIAGLGEVSYSQITQFGA
EECCCCCEEEECCCCCCCEEEEEECCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]