Click here to switch to the map view.

The map label for this gene is lsrB [H]

Identifier: 153947885

GI number: 153947885

Start: 3674043

End: 3675050

Strand: Direct

Name: lsrB [H]

Synonym: YpsIP31758_3265

Alternate gene names: 153947885

Gene position: 3674043-3675050 (Clockwise)

Preceding gene: 153947229

Following gene: 153947534

Centisome position: 77.79

GC content: 49.5

Gene sequence:

>1008_bases
ATGATGAGAAAGTTAATATTACCTTGCTTAATAACGACCTTGCTGGCTTCCCATGCGGCGTGGTCTGCTGACAGCAACAC
ACCACAAAAGGCGAATAAGCCGTTTACCCTGGGTGTCGTGGTTAAAGTGGGGGGTATTCCTTGGTTCAATGTAATGGAGC
AAGGTATCAAAGCGGAAGGTCAGGCATTGGGGGTTAACGCTTGGCAGGTGGGGCCAACGACCGCAGATCCCGCTGAGCAA
GTGCGGGCTATTGAAGACTTAATTGCCAAAAAAGTCGATGTCATCGGGGTGGTTCCTAATGATGCCAAAGTGTTGGAGCC
CGTACTGAAGCGGGCGCAAGAAGCCGGTATTAAGGTTATCACGCACGAGTCACCGGGTCAGATCAATGCCGACTGGGATT
TTGAATTGCTCGATACCCAGAGCATGGGTGCTAACCATATGAAAGATATGGCGCAGTGTATGGGTGAAGAAGGCAAATAC
GCCATGTTTGTTGGCAGCCTGACCGTGCCACTGGTCAATGAGTGGGCAGATGCCGCCATTGCTTATCAAAAAGCCAATTA
CCCGAAAATGGTGCTGGTTGAAGACCGCTTCGGTGTCGCCGAGTCTGTCGATGACTCCATGCGTACTGCCAATGATTTGT
TATCTAAACATAAAGATCTGAAAGGCATTATGTCTTTTGGTTCACAAGGCCCTATTGGGGCTGGCCGGGCTATTGATAAG
CGTAAAAAGAACGATACCACCTGTGTCTTCGGCACCTTCACACCAGGCCAGGGCATTAAGTTGCTGGAAAAAGGCGCCAT
TGATGGCGGTTACATCTCCAACCCCATGGTCGCAGGTAAAGTCTTCGTCCAGGTCGCTACCGCCATGATGAATGGTGAGC
CTATCAAAGATGGCGTCAAACTGGGTGATATGGGCGAAATCAAAACCCAAGGCAATACCATCCTCAGTGATAACCCTGAA
AAGCTGGATATCGAAAATACCAAACGTCTGGTGAAGCTCGGTTTATAA

Upstream 100 bases:

>100_bases
ACCGTTGCACCAAAAAATAGCCATACAACAAAAACAAGCCAATCTGCTTTATATCAATATTATAAAGCCGGCCTTACCTA
TTGCGCTTTCAGAGGATGTA

Downstream 100 bases:

>100_bases
GCACCGCGCAAACTAAAAAAGATGATTTTACCCAAGATAATTAGCGTTGTAGGTAGACGTAATCAGCGAGGGAGATAAGC
CGGGTACTCACCTGCCCGGC

Product: carbohydrate ABC transporter periplasmic-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPWFNVMEQGIKAEGQALGVNAWQVGPTTADPAEQ
VRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQINADWDFELLDTQSMGANHMKDMAQCMGEEGKY
AMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMRTANDLLSKHKDLKGIMSFGSQGPIGAGRAIDK
RKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATAMMNGEPIKDGVKLGDMGEIKTQGNTILSDNPE
KLDIENTKRLVKLGL

Sequences:

>Translated_335_residues
MMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPWFNVMEQGIKAEGQALGVNAWQVGPTTADPAEQ
VRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQINADWDFELLDTQSMGANHMKDMAQCMGEEGKY
AMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMRTANDLLSKHKDLKGIMSFGSQGPIGAGRAIDK
RKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATAMMNGEPIKDGVKLGDMGEIKTQGNTILSDNPE
KLDIENTKRLVKLGL
>Mature_335_residues
MMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPWFNVMEQGIKAEGQALGVNAWQVGPTTADPAEQ
VRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVITHESPGQINADWDFELLDTQSMGANHMKDMAQCMGEEGKY
AMFVGSLTVPLVNEWADAAIAYQKANYPKMVLVEDRFGVAESVDDSMRTANDLLSKHKDLKGIMSFGSQGPIGAGRAIDK
RKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATAMMNGEPIKDGVKLGDMGEIKTQGNTILSDNPE
KLDIENTKRLVKLGL

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=284, Percent_Identity=26.7605633802817, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 36051; Mature: 36051

Theoretical pI: Translated: 6.16; Mature: 6.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPWFNVMEQGIKAEG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCC
QALGVNAWQVGPTTADPAEQVRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVI
CEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCEEE
THESPGQINADWDFELLDTQSMGANHMKDMAQCMGEEGKYAMFVGSLTVPLVNEWADAAI
EECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
AYQKANYPKMVLVEDRFGVAESVDDSMRTANDLLSKHKDLKGIMSFGSQGPIGAGRAIDK
HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATAMMNGEPIKDGVK
CCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
LGDMGEIKTQGNTILSDNPEKLDIENTKRLVKLGL
CCCCCCEECCCCEEECCCCCEECHHHHHHHHHCCC
>Mature Secondary Structure
MMRKLILPCLITTLLASHAAWSADSNTPQKANKPFTLGVVVKVGGIPWFNVMEQGIKAEG
CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCCCHHHHHHHHHCCCC
QALGVNAWQVGPTTADPAEQVRAIEDLIAKKVDVIGVVPNDAKVLEPVLKRAQEAGIKVI
CEECCEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCEEE
THESPGQINADWDFELLDTQSMGANHMKDMAQCMGEEGKYAMFVGSLTVPLVNEWADAAI
EECCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHH
AYQKANYPKMVLVEDRFGVAESVDDSMRTANDLLSKHKDLKGIMSFGSQGPIGAGRAIDK
HHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH
RKKNDTTCVFGTFTPGQGIKLLEKGAIDGGYISNPMVAGKVFVQVATAMMNGEPIKDGVK
CCCCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
LGDMGEIKTQGNTILSDNPEKLDIENTKRLVKLGL
CCCCCCEECCCCEEECCCCCEECHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA