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The map label for this gene is yulB [H]

Identifier: 153947229

GI number: 153947229

Start: 3673076

End: 3673885

Strand: Direct

Name: yulB [H]

Synonym: YpsIP31758_3264

Alternate gene names: 153947229

Gene position: 3673076-3673885 (Clockwise)

Preceding gene: 153947951

Following gene: 153947885

Centisome position: 77.76

GC content: 42.84

Gene sequence:

>810_bases
ATGTTACAAGCTGAACGCCATAAAATTATTTGCACTCATGTACAACAACAAGGTTCCGCGCTGGTCACCGAGCTATCGGT
TCTGTGCCAGGTATCGCAGGAGACGATTCGCCGTGACCTGACGGTGTTGCAAAAAAAACAAAAACTGATCCGCAGTTTTG
GCGGCGCTGTCGCACTGGATAGCCCTGAAATACCGGTAATTGATATTAAAGAAATTCACGATGGCCTCAATGTCATCGAT
AGGGCGGAGTCCTTCCGTAAACGAACGGAGGAGCACCCTGATACTAAAATGAAAATTGCCAAAGCAGCATTGCAGTTTAT
CCGGCCTGGCGACTGTATTTTACTGGATAACAGCAGCTCGTGTTGGTTTTTAGCACGACAAATTCCAGATATTGAAATTA
CCGTAGTGACCAATTCGGTCAAAATTATTCAGGCGCTAGCCTGCCGTGACAAAGTGCGCATCATTGGGATTGGCGGTGAA
TACTCAGCTCGTCACGATGACTTCCACGGCCCCGTGGCAGAAAATGCCATCAGGAATTTCCAGATTAATACCTTTTTCTT
CTCCTGTCAGGGGATTAACCAAGACAGTGGCGTTAGAGATGGCAATGATATTAATGCCAAATTGAAGCAGGTAATGTTGC
AAGTGTCTGGGCAAAAAATATTATTGGCAGACTCCAGTAAATTCGATCAATACGCATTTTGTAAAATATGTACTTTAGAT
GAAGTCGATATTCTTATTACCAATAGATTAAGCTCACAAAACTATCGCAGCGATAATCCTAAATTAAATATTATTGAATC
CGATAAATAG

Upstream 100 bases:

>100_bases
ATTAGCATCAATATAGCAGCATGAATTTAACAGGTGCTTATTTTTAGAGAAGTCCAGCCCGATAAGTACAATCCGATAAG
TACAGAGTGTTGAGGTAAGC

Downstream 100 bases:

>100_bases
ACGCAAATTAATTAAGGATTATTGGCATCATCAAGTTAACCGCGTTAACACCAGAGAACCGTTGCACCAAAAAATAGCCA
TACAACAAAAACAAGCCAAT

Product: DeoR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MLQAERHKIICTHVQQQGSALVTELSVLCQVSQETIRRDLTVLQKKQKLIRSFGGAVALDSPEIPVIDIKEIHDGLNVID
RAESFRKRTEEHPDTKMKIAKAALQFIRPGDCILLDNSSSCWFLARQIPDIEITVVTNSVKIIQALACRDKVRIIGIGGE
YSARHDDFHGPVAENAIRNFQINTFFFSCQGINQDSGVRDGNDINAKLKQVMLQVSGQKILLADSSKFDQYAFCKICTLD
EVDILITNRLSSQNYRSDNPKLNIIESDK

Sequences:

>Translated_269_residues
MLQAERHKIICTHVQQQGSALVTELSVLCQVSQETIRRDLTVLQKKQKLIRSFGGAVALDSPEIPVIDIKEIHDGLNVID
RAESFRKRTEEHPDTKMKIAKAALQFIRPGDCILLDNSSSCWFLARQIPDIEITVVTNSVKIIQALACRDKVRIIGIGGE
YSARHDDFHGPVAENAIRNFQINTFFFSCQGINQDSGVRDGNDINAKLKQVMLQVSGQKILLADSSKFDQYAFCKICTLD
EVDILITNRLSSQNYRSDNPKLNIIESDK
>Mature_269_residues
MLQAERHKIICTHVQQQGSALVTELSVLCQVSQETIRRDLTVLQKKQKLIRSFGGAVALDSPEIPVIDIKEIHDGLNVID
RAESFRKRTEEHPDTKMKIAKAALQFIRPGDCILLDNSSSCWFLARQIPDIEITVVTNSVKIIQALACRDKVRIIGIGGE
YSARHDDFHGPVAENAIRNFQINTFFFSCQGINQDSGVRDGNDINAKLKQVMLQVSGQKILLADSSKFDQYAFCKICTLD
EVDILITNRLSSQNYRSDNPKLNIIESDK

Specific function: Transcriptional Activator Of The Fuc Operon. [C]

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789170, Length=247, Percent_Identity=35.6275303643725, Blast_Score=146, Evalue=1e-36,
Organism=Escherichia coli, GI1789059, Length=253, Percent_Identity=32.0158102766798, Blast_Score=117, Evalue=6e-28,
Organism=Escherichia coli, GI1789519, Length=246, Percent_Identity=29.6747967479675, Blast_Score=117, Evalue=8e-28,
Organism=Escherichia coli, GI1788069, Length=250, Percent_Identity=30, Blast_Score=115, Evalue=4e-27,
Organism=Escherichia coli, GI1790635, Length=250, Percent_Identity=26.8, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1789829, Length=249, Percent_Identity=26.9076305220884, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI226510968, Length=249, Percent_Identity=26.9076305220884, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787540, Length=246, Percent_Identity=26.4227642276423, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1790753, Length=238, Percent_Identity=26.0504201680672, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87082344, Length=253, Percent_Identity=22.5296442687747, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 30227; Mature: 30227

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQAERHKIICTHVQQQGSALVTELSVLCQVSQETIRRDLTVLQKKQKLIRSFGGAVALD
CCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
SPEIPVIDIKEIHDGLNVIDRAESFRKRTEEHPDTKMKIAKAALQFIRPGDCILLDNSSS
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
CWFLARQIPDIEITVVTNSVKIIQALACRDKVRIIGIGGEYSARHDDFHGPVAENAIRNF
EEEEEECCCCEEEEEEECHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCE
QINTFFFSCQGINQDSGVRDGNDINAKLKQVMLQVSGQKILLADSSKFDQYAFCKICTLD
EEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECC
EVDILITNRLSSQNYRSDNPKLNIIESDK
CEEEEEEECCCCCCCCCCCCEEEEEECCC
>Mature Secondary Structure
MLQAERHKIICTHVQQQGSALVTELSVLCQVSQETIRRDLTVLQKKQKLIRSFGGAVALD
CCCCCCCCEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEC
SPEIPVIDIKEIHDGLNVIDRAESFRKRTEEHPDTKMKIAKAALQFIRPGDCILLDNSSS
CCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
CWFLARQIPDIEITVVTNSVKIIQALACRDKVRIIGIGGEYSARHDDFHGPVAENAIRNF
EEEEEECCCCEEEEEEECHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHCE
QINTFFFSCQGINQDSGVRDGNDINAKLKQVMLQVSGQKILLADSSKFDQYAFCKICTLD
EEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEEECC
EVDILITNRLSSQNYRSDNPKLNIIESDK
CEEEEEEECCCCCCCCCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9274030; 9384377 [H]