| Definition | Yersinia pseudotuberculosis IP 31758, complete genome. |
|---|---|
| Accession | NC_009708 |
| Length | 4,723,306 |
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The map label for this gene is cdr [H]
Identifier: 153947324
GI number: 153947324
Start: 1533506
End: 1535152
Strand: Direct
Name: cdr [H]
Synonym: YpsIP31758_1310
Alternate gene names: 153947324
Gene position: 1533506-1535152 (Clockwise)
Preceding gene: 153946944
Following gene: 153947537
Centisome position: 32.47
GC content: 42.14
Gene sequence:
>1647_bases ATGGGAAAAACAATTGTTATCGTCGGTGGTGTTGCCGGTGGTGCCAGTGCTGCTGCTCGCCTGCGCCGTTTAAATGAATA TGACAATATTATTATTCTAGAAAGAGGCGAGTATATCTCTTTTGCCAACTGTGGCTTGCCTTATTATATCGGTGGTGTTA TTACCGAAAGAGATAAACTTTTAATCCAAACGCCAGAGAAAATGAAGGATAGATTTAATATTGATGTCAGAACTGAAAAT GAAGTCGTTGATATAGACAGTGCGAGTAAAACCATTACTGTGATTAATCATAAAGTGGGTAAGGAAGAGTTTATACAATA TGACACATTAATTCTATCGCCGGGTGCCCGTCCTTTTATTCCAGACATTGCCGGTCTGTCAGTAAATAGCTCTGTATTTA CCCTGCGTAATATGTTAGATACAGACAATATTAAAGCGTATCTAATTTCCGCTACACCTGAAGCTGTCACCATTATTGGT GGTGGTTTTATCGGATTGGAAATGGCGGAGAATCTGGTGAGTAGTGGGTTGAAAGTCACTATTATTGAATTATCAAATCA AATTCTTTCGCCACTTGATTATGAAATGGCAGCGATTGTCGAAAAGCATTTAAAAGACAACGGCATTGATGTGATAAAAA ATGACGCAGTGGTACAGTTCGATGAATCTGCACATCAAATACATTTGAAATCAGGGAAAATTATTACCACCGACATGGTC ATTCTGGCGATAGGTGTCGAACCTGAAAATGACTTGGCAAAGAAAGCTCATCTGGATTTGGGGATCAGAGGGAGCATCTT GGTTAATGAGAAATTACAGACGAGTGTAGCGGATATTTATGCTATCGGTGATGCTATCCAGGTTGTCGATTATATCAATG GTCAGGCAACGTATATTCCACTGGCCTGGCCGGCTAACCGGCAAGGCAGATTATTGGCTGATATTATTAATGGCCGTGAT GTGCGCTATCACGGAACATTAGGCACTGCGATTGCCAAAGTACTTGATCTTAGCGCCGCCTGTACGGGTAACAACGAACG TCTGTTAAAGCGTTTGGCGATCCCTTATCAAGTTGTTCATATTCATGGGATGTCACATGCGAGTTATTATCCTGGCGCTC ATCAGATTTCATTGAAATTATTATTCTCGCCAGAGAACGGGCGTATTCTTGGTGCACAGGCTGTTGGTCAGGGGGGGACA GATAAACGCATTGATGTGTTGGCGACCGCGATCAAAGGCAGGCTGACTATCTATGATCTTCCCGACTTAGAATTGGCTTA TGCCCCACCTTATTCGTCAGCAAAAGATCCGGTCAATATGTTGGGTTATGTTGCAGAAAATATCTCGAATGGCGATGTGA TGACGAAGCAATGGCATGAAGTGGATGCCTTTATGGCTGATGGGGGGATTATTATTGATGTACGAGATGAGGCGGAGTTT ATCTCCGGCAGTATAAAAACTGCGGTGAATATCCCTCTGTCTGAATTGCGTCAAAAATTGGCATTAATACCCCAAGATAA AAAGATACTGGTGACTTGCCAGGTTGGGCTAAGAGGGTACATTGCTGCAAGAATTCTGTCTCAATATGGCTATACCGTGG CTAATTTAGATGGGGGATATTTGACCTTTAATTATGCTAATGCTTGA
Upstream 100 bases:
>100_bases CATATTTAACAAGAAGCTATTATAAAGAAGTCACTGTTTAATAACCAATAGGCCATTTTCAAACTGGAAGTGGCCGTCCT AATCTGAGTGATAAAGAGTT
Downstream 100 bases:
>100_bases TGTTTATTTTGTATAAAAAGGGCATCTATACCCAAAATAATTCGCGTTGCAGTAAGGCAGTCAGGGCAGCTAACTCCCCT GCAGCGTGAAGGACGATGGG
Product: pyridine nucleotide-disulphide oxidoreductase family protein
Products: NA
Alternate protein names: CoA-disulfide reductase; CoADR [H]
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MGKTIVIVGGVAGGASAAARLRRLNEYDNIIILERGEYISFANCGLPYYIGGVITERDKLLIQTPEKMKDRFNIDVRTEN EVVDIDSASKTITVINHKVGKEEFIQYDTLILSPGARPFIPDIAGLSVNSSVFTLRNMLDTDNIKAYLISATPEAVTIIG GGFIGLEMAENLVSSGLKVTIIELSNQILSPLDYEMAAIVEKHLKDNGIDVIKNDAVVQFDESAHQIHLKSGKIITTDMV ILAIGVEPENDLAKKAHLDLGIRGSILVNEKLQTSVADIYAIGDAIQVVDYINGQATYIPLAWPANRQGRLLADIINGRD VRYHGTLGTAIAKVLDLSAACTGNNERLLKRLAIPYQVVHIHGMSHASYYPGAHQISLKLLFSPENGRILGAQAVGQGGT DKRIDVLATAIKGRLTIYDLPDLELAYAPPYSSAKDPVNMLGYVAENISNGDVMTKQWHEVDAFMADGGIIIDVRDEAEF ISGSIKTAVNIPLSELRQKLALIPQDKKILVTCQVGLRGYIAARILSQYGYTVANLDGGYLTFNYANA
Sequences:
>Translated_548_residues MGKTIVIVGGVAGGASAAARLRRLNEYDNIIILERGEYISFANCGLPYYIGGVITERDKLLIQTPEKMKDRFNIDVRTEN EVVDIDSASKTITVINHKVGKEEFIQYDTLILSPGARPFIPDIAGLSVNSSVFTLRNMLDTDNIKAYLISATPEAVTIIG GGFIGLEMAENLVSSGLKVTIIELSNQILSPLDYEMAAIVEKHLKDNGIDVIKNDAVVQFDESAHQIHLKSGKIITTDMV ILAIGVEPENDLAKKAHLDLGIRGSILVNEKLQTSVADIYAIGDAIQVVDYINGQATYIPLAWPANRQGRLLADIINGRD VRYHGTLGTAIAKVLDLSAACTGNNERLLKRLAIPYQVVHIHGMSHASYYPGAHQISLKLLFSPENGRILGAQAVGQGGT DKRIDVLATAIKGRLTIYDLPDLELAYAPPYSSAKDPVNMLGYVAENISNGDVMTKQWHEVDAFMADGGIIIDVRDEAEF ISGSIKTAVNIPLSELRQKLALIPQDKKILVTCQVGLRGYIAARILSQYGYTVANLDGGYLTFNYANA >Mature_547_residues GKTIVIVGGVAGGASAAARLRRLNEYDNIIILERGEYISFANCGLPYYIGGVITERDKLLIQTPEKMKDRFNIDVRTENE VVDIDSASKTITVINHKVGKEEFIQYDTLILSPGARPFIPDIAGLSVNSSVFTLRNMLDTDNIKAYLISATPEAVTIIGG GFIGLEMAENLVSSGLKVTIIELSNQILSPLDYEMAAIVEKHLKDNGIDVIKNDAVVQFDESAHQIHLKSGKIITTDMVI LAIGVEPENDLAKKAHLDLGIRGSILVNEKLQTSVADIYAIGDAIQVVDYINGQATYIPLAWPANRQGRLLADIINGRDV RYHGTLGTAIAKVLDLSAACTGNNERLLKRLAIPYQVVHIHGMSHASYYPGAHQISLKLLFSPENGRILGAQAVGQGGTD KRIDVLATAIKGRLTIYDLPDLELAYAPPYSSAKDPVNMLGYVAENISNGDVMTKQWHEVDAFMADGGIIIDVRDEAEFI SGSIKTAVNIPLSELRQKLALIPQDKKILVTCQVGLRGYIAARILSQYGYTVANLDGGYLTFNYANA
Specific function: Catalyzes specifically the NADPH-dependent reduction of coenzyme A disulfide [H]
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-III pyridine nucleotide-disulfide oxidoreductase family [H]
Homologues:
Organism=Homo sapiens, GI65787454, Length=316, Percent_Identity=26.2658227848101, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI226437568, Length=316, Percent_Identity=26.2658227848101, Blast_Score=104, Evalue=2e-22, Organism=Homo sapiens, GI21389617, Length=316, Percent_Identity=26.2658227848101, Blast_Score=104, Evalue=3e-22, Organism=Escherichia coli, GI1789065, Length=259, Percent_Identity=30.8880308880309, Blast_Score=100, Evalue=4e-22, Organism=Escherichia coli, GI87082354, Length=309, Percent_Identity=27.1844660194175, Blast_Score=89, Evalue=8e-19, Organism=Escherichia coli, GI1788892, Length=290, Percent_Identity=27.2413793103448, Blast_Score=74, Evalue=2e-14, Organism=Escherichia coli, GI1789765, Length=341, Percent_Identity=24.633431085044, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1786307, Length=309, Percent_Identity=25.5663430420712, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1789915, Length=222, Percent_Identity=27.027027027027, Blast_Score=69, Evalue=1e-12, Organism=Drosophila melanogaster, GI24639257, Length=288, Percent_Identity=25.6944444444444, Blast_Score=78, Evalue=1e-14, Organism=Drosophila melanogaster, GI281359715, Length=288, Percent_Identity=25.6944444444444, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI281359713, Length=288, Percent_Identity=25.6944444444444, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24639250, Length=288, Percent_Identity=25.6944444444444, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI18543267, Length=288, Percent_Identity=25.6944444444444, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24639252, Length=288, Percent_Identity=25.6944444444444, Blast_Score=78, Evalue=2e-14, Organism=Drosophila melanogaster, GI24585130, Length=290, Percent_Identity=23.7931034482759, Blast_Score=69, Evalue=9e-12, Organism=Drosophila melanogaster, GI24581020, Length=254, Percent_Identity=28.740157480315, Blast_Score=66, Evalue=5e-11, Organism=Drosophila melanogaster, GI28573993, Length=254, Percent_Identity=28.740157480315, Blast_Score=66, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017758 - InterPro: IPR016156 - InterPro: IPR013027 - InterPro: IPR004099 - InterPro: IPR001327 [H]
Pfam domain/function: PF00070 Pyr_redox; PF07992 Pyr_redox_2; PF02852 Pyr_redox_dim [H]
EC number: =1.8.1.14 [H]
Molecular weight: Translated: 59562; Mature: 59431
Theoretical pI: Translated: 5.49; Mature: 5.49
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGKTIVIVGGVAGGASAAARLRRLNEYDNIIILERGEYISFANCGLPYYIGGVITERDKL CCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEEECCEEECCCEE LIQTPEKMKDRFNIDVRTENEVVDIDSASKTITVINHKVGKEEFIQYDTLILSPGARPFI EEECCHHHHHHEEEEEECCCCEEEECCCCCEEEEEECCCCHHHHHEEEEEEECCCCCCCC PDIAGLSVNSSVFTLRNMLDTDNIKAYLISATPEAVTIIGGGFIGLEMAENLVSSGLKVT CCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEHHHHHHHHHHCCCEEE IIELSNQILSPLDYEMAAIVEKHLKDNGIDVIKNDAVVQFDESAHQIHLKSGKIITTDMV EEEECHHHCCCCCHHHHHHHHHHHCCCCCEEEECCEEEEECCCCEEEEECCCCEEEEEEE ILAIGVEPENDLAKKAHLDLGIRGSILVNEKLQTSVADIYAIGDAIQVVDYINGQATYIP EEEEECCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCHHEEHHHCCCCEEEEE LAWPANRQGRLLADIINGRDVRYHGTLGTAIAKVLDLSAACTGNNERLLKRLAIPYQVVH EECCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEE IHGMSHASYYPGAHQISLKLLFSPENGRILGAQAVGQGGTDKRIDVLATAIKGRLTIYDL EECCCCCCCCCCCEEEEEEEEEECCCCEEEEEHCCCCCCCCCHHHHHHHHHCCEEEEEEC PDLELAYAPPYSSAKDPVNMLGYVAENISNGDVMTKQWHEVDAFMADGGIIIDVRDEAEF CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHEEECCCEEEEECCCHHH ISGSIKTAVNIPLSELRQKLALIPQDKKILVTCQVGLRGYIAARILSQYGYTVANLDGGY HCCCCEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCCCE LTFNYANA EEEEECCC >Mature Secondary Structure GKTIVIVGGVAGGASAAARLRRLNEYDNIIILERGEYISFANCGLPYYIGGVITERDKL CCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCCEEECCEEECCCEE LIQTPEKMKDRFNIDVRTENEVVDIDSASKTITVINHKVGKEEFIQYDTLILSPGARPFI EEECCHHHHHHEEEEEECCCCEEEECCCCCEEEEEECCCCHHHHHEEEEEEECCCCCCCC PDIAGLSVNSSVFTLRNMLDTDNIKAYLISATPEAVTIIGGGFIGLEMAENLVSSGLKVT CCCCCCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCEEHHHHHHHHHHCCCEEE IIELSNQILSPLDYEMAAIVEKHLKDNGIDVIKNDAVVQFDESAHQIHLKSGKIITTDMV EEEECHHHCCCCCHHHHHHHHHHHCCCCCEEEECCEEEEECCCCEEEEECCCCEEEEEEE ILAIGVEPENDLAKKAHLDLGIRGSILVNEKLQTSVADIYAIGDAIQVVDYINGQATYIP EEEEECCCCHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCHHEEHHHCCCCEEEEE LAWPANRQGRLLADIINGRDVRYHGTLGTAIAKVLDLSAACTGNNERLLKRLAIPYQVVH EECCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEE IHGMSHASYYPGAHQISLKLLFSPENGRILGAQAVGQGGTDKRIDVLATAIKGRLTIYDL EECCCCCCCCCCCEEEEEEEEEECCCCEEEEEHCCCCCCCCCHHHHHHHHHCCEEEEEEC PDLELAYAPPYSSAKDPVNMLGYVAENISNGDVMTKQWHEVDAFMADGGIIIDVRDEAEF CCCEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHEEECCCEEEEECCCHHH ISGSIKTAVNIPLSELRQKLALIPQDKKILVTCQVGLRGYIAARILSQYGYTVANLDGGY HCCCCEEEEECCHHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCEEEECCCCE LTFNYANA EEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA